PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13153s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 446aa    MW: 49498.1 Da    PI: 6.3027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13153s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08254301455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cagra.13153s0001.1.p 254 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 301
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-8248305No hitNo description
SuperFamilySSF474592.36E-16248314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16250315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-6254301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MENELFMNTE FPPPPPEFEP PSSSSAMMLN WALMDPTNPQ QDPSFLWEKS TDQQQSIFDS  60
ALSSLVSSPT PSNSNFSGGC GGGDGFIIRE LIADPGFAER AARFSCFGSR SFNGRTNSNL  120
PINNNVINNS GKLTRVSSTP ALNGLVSPEL APMIPGGEFS RKRKSLPKGK PKENPISTAS  180
PSPSFSKTAE KKEDWNGKGS KSLEEKVGKR RRDEEEDNVE EEGGEGNKSN NTKPPEPPKD  240
YIHVRARRGQ ATDSHSLAER VRREKIGERM KLLQDLVPGC NKVTGKALML DEIINYVQSL  300
QRQVEFLSMK LSSVNDTRLE FNVDALVSKD VVMIPSSNNN NRLHEEGLQS KSSSHHHHQQ  360
QQQLNNIYNN NSQLHPNNMM LQSPMNSLET SSLARSFTHL PTLTQFTDSI SQYQMFSEED  420
LQSIVGMGVA QQNPNHESQH MKLEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13153s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886100.0AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493685.10.0PREDICTED: transcription factor bHLH78
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLR0EWH50.0R0EWH5_9BRAS; Uncharacterized protein
STRINGCagra.13153s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]