PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13365s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 213aa    MW: 22494.7 Da    PI: 7.0799
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13365s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.52.2e-362783460
                zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                          + l+cprC+st tkfCyynny+l+qPryfCk+CrryWt+GG+lr+vPvGgg+r++ +
  Cagra.13365s0005.1.p 27 EPLPCPRCNSTTTKFCYYNNYNLAQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSS 83
                          6789*************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.7E-322883IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.52983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-213378IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPSEPNQTRP NRVLASTAAY PPPNLTEPLP CPRCNSTTTK FCYYNNYNLA QPRYFCKSCR  60
RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS STATSSSSSS SVITTTTQEP ATTEATQSKG  120
GSNVNVSFAS LLGLGSGTGG LDYEFGYGYG YGLEEMSIDY LGLSSSTGGG EIPVVNGGGD  180
TWQLGEVEGG KSGGDSMIWP GLEISMQSND VK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13365s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303352.12e-98dof zinc finger protein DOF1.6
SwissprotQ9SX971e-84DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLR0IDG64e-97R0IDG6_9BRAS; Uncharacterized protein
STRINGCagra.13365s0005.1.p1e-153(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-39Dof family protein