PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13424s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23639.6 Da    PI: 6.6851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13424s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.7e-184899556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++t+ ql+ Lee Fek++ +  +++  LA+klgL+ +qV vWFqNrRa++k
  Cagra.13424s0008.1.p 48 RKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYK 99
                          4789***********************************************9 PP
2HD-ZIP_I/II1149.1e-3746136292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           k r+l+  q++lLEesFe++++Lep+rK  la++Lgl+p qvavWFqnrRAR+ktkqlE+d+++Lk+ y +lk++ + L +++++L+++
  Cagra.13424s0008.1.p  46 KTRKLTPIQLRLLEESFEKDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYKTKQLEHDCDSLKAIYAKLKTDWDILYSQNQTLKNK 134
                           889************************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           ++
  Cagra.13424s0008.1.p 135 VS 136
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.82341101IPR001356Homeobox domain
SMARTSM003898.5E-1742105IPR001356Homeobox domain
SuperFamilySSF466897.7E-1846109IPR009057Homeodomain-like
CDDcd000864.05E-1546102No hitNo description
Gene3DG3DSA:1.10.10.607.4E-1948107IPR009057Homeodomain-like
PfamPF000463.9E-154899IPR001356Homeobox domain
PRINTSPR000316.7E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000316.7E-58197IPR000047Helix-turn-helix motif
PfamPF021831.6E-13101142IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MENSDTNDSE VFFWFHNQSH SHNNSEPNTV DEEGVCESHV LREITKTRKL TPIQLRLLEE  60
SFEKDKRLEP KRKLWLAEKL GLKPSQVAVW FQNRRARYKT KQLEHDCDSL KAIYAKLKTD  120
WDILYSQNQT LKNKVSLLKE KLRMQENLET QKLGENGISM KSYNTQYSEE EDGVGNQYSF  180
PELAVLGFYY DPTLTSSNLR L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13424s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003481e-102AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026841e-102CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303997.11e-139homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-111ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLR0IF281e-137R0IF28_9BRAS; Uncharacterized protein
STRINGCagra.13424s0008.1.p1e-148(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-113HD-ZIP family protein