PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13458s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 372aa    MW: 41588.3 Da    PI: 5.8959
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13458s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.81.4e-60693272264
                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           ve L++++++v+s++l+laq +L+rl+++ +sp+g+p++R+a+yf+eAL + +++      +  + + +s+++ ++++ a+k fs vsP
  Cagra.13458s0001.1.p  69 VEDLIRVVNCVDSDELQLAQVILSRLNQRlRSPTGRPLERAAFYFKEALGSIITG-----TNRNQNRLSSWSEIVQKIRAVKEFSGVSP 152
                           689*************************99*************************.....6777888888999**************** PP

                  GRAS  90 ilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                           i+ fsh+taNqaIl+++  +       H++Df+i+ G+Q+++L++++a+++ +g   lR+T+v+   ++s+ e++ ++e+La+fA+ l+
  Cagra.13458s0001.1.p 153 IPLFSHFTANQAILDSLTVHssspPYAHVVDFEIGFGGQYASLMREIAEKSvNGIGFLRVTAVVT--EDSAVETRLVKENLAQFAADLK 239
                           ****************99884455556************************99999*********..459******************* PP

                  GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerfl 258
                           ++f++++++++++e l++++ r+ +gE ++V l+  ++r l       + ++ +++ ++++sPkvvv+v++e    ++ +++sF ++f+
  Cagra.13458s0001.1.p 240 IRFQIEFVLMRTFEVLSFKAVRFVEGERTVVLLSPVIFRRL-------NGISGFVNDLRRVSPKVVVFVDSEgwtgISGGAGSFQREFV 321
                           ****************************************9.......33567*******************66444447779999999 PP

                  GRAS 259 ealeyy 264
                           + l+ +
  Cagra.13458s0001.1.p 322 SGLDQF 327
                           988765 PP
2GRAS43.64.6e-14324369329374
                  GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           l++++  qa++l++k +++g++v +++g+l+l+W++r+Lv++SaWr
  Cagra.13458s0001.1.p 324 LDQFVDFQAECLVEKAQVRGFHVAKRQGELMLCWHERSLVATSAWR 369
                           78999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.68942371IPR005202Transcription factor GRAS
PfamPF035144.8E-5869327IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MRSMDWDSIM KELELDDDST PTLKSNFPTF AISPPLPVFP DQFHPPEFPG HGHGFIDNNN  60
EGGGGFDFVE DLIRVVNCVD SDELQLAQVI LSRLNQRLRS PTGRPLERAA FYFKEALGSI  120
ITGTNRNQNR LSSWSEIVQK IRAVKEFSGV SPIPLFSHFT ANQAILDSLT VHSSSPPYAH  180
VVDFEIGFGG QYASLMREIA EKSVNGIGFL RVTAVVTEDS AVETRLVKEN LAQFAADLKI  240
RFQIEFVLMR TFEVLSFKAV RFVEGERTVV LLSPVIFRRL NGISGFVNDL RRVSPKVVVF  300
VDSEGWTGIS GGAGSFQREF VSGLDQFVDF QAECLVEKAQ VRGFHVAKRQ GELMLCWHER  360
SLVATSAWRF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-117432725270Protein SCARECROW
5b3h_A2e-117432724269Protein SCARECROW
5b3h_D2e-117432724269Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13458s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297491.10.0scarecrow-like protein 15
SwissprotO232101e-167SCL15_ARATH; Scarecrow-like protein 15
TrEMBLR0HL020.0R0HL02_9BRAS; Uncharacterized protein
STRINGCagra.13458s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-159GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]