PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1365s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 543aa    MW: 59977.8 Da    PI: 7.5468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1365s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.59.9e-18285334255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Cagra.1365s0019.1.p 285 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 334
                          889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23282354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19284353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.69E-15285336No hitNo description
PfamPF000103.3E-15285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPTKLTPPS SQGSHLKTHD FLQPLECVGA  60
KEEITRINTT TTASEKPPPP APPPPLQHVL PGGIGTYTIS PIPYFHHHHQ RVPKPELSPP  120
MMFTTAAQAT GGNERIAVDD NSNSNCSSYA AAASGFTLWD ESASGMKGQT RKENNVGERA  180
NMRADVATTV GQWPVVERRS QSLTNNHMSG FSSRSSSQGS GLKSQSFMDM IRSAKGSSQD  240
DDLDDEEDFI MKKESSSTSQ SHRVDLRVKA DVRGSGNDQK LNTPRSKHSA TEQRRRSKIN  300
DRFQMLRQLI PNSDQKRDKA SFLLEVIEYI QFLQEKADKY ETSYQGWNHE PAKLLNWQRN  360
NQQLVPEGTV AFAPKLEEEK NNVPVPVLAT AQGVAIDHLT TATTSPFPLS IQSNSFFSPV  420
IAGNPVPQFH TRVASSEAVE PSPSSRSQTQ PLKEEEEVED EKILEGNISI SSVYSQGLVK  480
TLREALENSG VDLTKASISV EIELAKQSSS SFKDHEVRGP VSRTRNEDVK QTRKPKRLKT  540
GQ*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1365s0019.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636601.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLR0FDU10.0R0FDU1_9BRAS; Uncharacterized protein
STRINGCagra.1365s0019.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]