PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1390s0010.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 355aa    MW: 39592.3 Da    PI: 7.6138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1390s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  Cagra.1390s0010.2.p 14 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding54.52.7e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Cagra.1390s0010.2.p  67 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.629961IPR017930Myb domain
SuperFamilySSF466895.24E-3111108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002497.0E-171461IPR001005SANT/Myb domain
CDDcd001671.59E-111661No hitNo description
PROSITE profilePS5129426.75362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665116IPR009057Homeodomain-like
SMARTSM007172.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1667112IPR001005SANT/Myb domain
CDDcd001679.31E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRSPCCDKA GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF TVQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLLKMG  120
IDPVTHKHKN ETLSSSTGQS KNAATLSHMA QWESARLEAE ARLARESKLL HLQHYQNNNL  180
NKSGPQHCFT HKTSTNWTKP NEGSGDQQLE SPTSTVTFSE NLPLMIMPLG IPTDIRNRNN  240
NIESSELPAM IEFAVSSSTS SDVSLVKEHE NDWIRQINCP CPTEGIGEGF TSLLLGDSVG  300
RSLSTGKVEA TASSVAGAGV VSESEYNYYE DNKNYWNSIL NLVDSSPSDS QAMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1390s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493090.0AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641619.10.0transcription factor MYB106 isoform X2
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLR0HW260.0R0HW26_9BRAS; Uncharacterized protein
STRINGXP_006296712.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-175myb domain protein 106