PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1418s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 146aa MW: 16848.2 Da PI: 5.1095

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1418s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.1	3.3e-12	47	93	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ rr ++NRe+A+rsR++Kk++ eeL+e+v L N++Lk++l + Cagra.1418s0004.1.p 47 KKRRRTISNRESAKRSRLKKKKRFEELTEEVNRLNLRNQELKNRLAN 93 899***************************************77754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-11	43	114	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	45	94	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-8	45	93	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-9	45	108	No hit	No description
SuperFamily	SSF57959	8.04E-9	47	95	No hit	No description
PROSITE pattern	PS00036	0	50	65	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MFSTNMEPVH ICFDDAMITG DELNDILAFL QSDESDNPSE VVPVDEKKRR RTISNRESAK 60 RSRLKKKKRF EELTEEVNRL NLRNQELKNR LANVVSCGNE ISNENNRLKT ESVCLEIRLL 120 ELYRFLVAIQ SPISTTVTYI TELEI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	68	RRRTISNRESAKRSRLKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1418s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301725.1	1e-100	basic leucine zipper 4
Swissprot	Q9LQ65	4e-78	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	R0ID76	9e-99	R0ID76_9BRAS; Uncharacterized protein
STRING	Cagra.1418s0004.1.p	1e-100	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	1e-69	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	Cagra.1418s0004.1.p

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]