PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1424s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 876aa    MW: 99236.3 Da    PI: 8.6677
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1424s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.8e-1317881090
                         HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                          + ++ +++p +f++++ +g   +  +l+  d s r+Wevk+  ++++    +t+GWkeF  an+ + gD+vv +++g s f
  Cagra.1424s0005.1.p 17 GFHTH-FTIPESFFSKYvEGR--SVAELK-SDVSDRTWEVKM--SGRR----FTDGWKEFIVANDFRIGDVVVVRYVGGSVF 88
                         45555.9**********7444..222455.66999*******..7776....9***********************997777 PP
2B352.77.9e-17165249996
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           +l+++ l+lp +f++++++k    ++++l+d + rsW + l ++ +s++++++ GW++F+++ng k+g f++F+l+g+ ++++v+++
  Cagra.1424s0005.1.p 165 LNLTTDTLYLPLHFTSSNSIKR-YCRKIVLRDGKERSWALGLEFNESSDTFYIR-GWRNFCDENGQKAGGFFMFELVGN-GETPVLSF 249
                          5678899********9998765.557**************************99.**********************95.44466554 PP
3B352.87e-17325405186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k ++p+d+ + ++l+l  +f++++g++k++  ++ l d++gr+W  +l ++kk+ +++l+kGWk+FvkangL++g +  +kl++
  Cagra.1424s0005.1.p 325 FIKFTLPPDYVRIRNLSLAAPFVRDNGINKPG--EICLLDKDGRRWLTNLGVDKKG-TTYLGKGWKDFVKANGLESGFT--LKLIW 405
                          899999*********************99766..8***************766665.578****************955..45446 PP
4B368.31.1e-21479574198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f++ ++++ +++++rl+++k+fa+e+g++k++   +tl  ++g +++  l+  +k++g+++l++GWk+Fvk+ngLk+gD++++kl++ ++
  Cagra.1424s0005.1.p 479 FVTLTITPASFERNRLCFSKNFARENGINKPG--IITLLGKDGIKYQTVLSLdNKTKGTMLLRTGWKDFVKDNGLKTGDSFTLKLIW-ED 565
                          7788999********************99766..8***************996667777****************************.78 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          +++v++++ 
  Cagra.1424s0005.1.p 566 QTPVLSLCP 574
                          889999986 PP
5B358.51.2e-18649743199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++++ +++rlvl  +f++e++++k++  t+ l d++g +W  kl+ r k+g++ l++GW+eF +an+ k g++++ kl++ +++
  Cagra.1424s0005.1.p 649 FVTLTITPSSVERNRLVLTAQFVRENNINKPG--TICLLDTDGTKWLTKLQ-RDKKGTMSLGQGWQEFTEANNFKLGESFTMKLTW-EDT 734
                          677888999999999***********999766..8***************5.44445689************************99.888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++ ++++r+
  Cagra.1424s0005.1.p 735 TPILSLLRT 743
                          899888875 PP
6B350.44e-16777866498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          +ltp+dv +s+ l+lp +f++++g++k +  ++tl  e+g +W+ +l    ++g++ l+ GWk+F++ang++ g+ +++++++++++++v
  Cagra.1424s0005.1.p 777 ALTPEDVKASK-LILPSQFMKANGINKLG--KITLWCENGMEWSAYL--LTRDGTVALGCGWKGFCEANGVQLGEPFTLEFIDKRDTTPV 861
                          58999999998.************99766..79999***********..99999****************************99999999 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          +k+ +
  Cagra.1424s0005.1.p 862 LKFSS 866
                          98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-14696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-157101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.546796IPR003340B3 DNA binding domain
CDDcd100171.43E-11891No hitNo description
SMARTSM010194.8E-161096IPR003340B3 DNA binding domain
PfamPF023622.1E-81888IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-17149250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-17154251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-13157249No hitNo description
PROSITE profilePS5086314.198157252IPR003340B3 DNA binding domain
SMARTSM010191.8E-24158253IPR003340B3 DNA binding domain
PfamPF023623.3E-15162249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16317415IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16319415IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-14323416No hitNo description
SMARTSM010193.4E-22325418IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605325418IPR003340B3 DNA binding domain
PfamPF023623.2E-15325415IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23469580IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22475580IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-17479574No hitNo description
SMARTSM010191.3E-30479576IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535479576IPR003340B3 DNA binding domain
PfamPF023624.0E-21479574IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-22643740IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-19645742IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-25649744IPR003340B3 DNA binding domain
PfamPF023623.5E-17649742IPR003340B3 DNA binding domain
PROSITE profilePS5086314.889649744IPR003340B3 DNA binding domain
CDDcd100172.29E-14649742No hitNo description
Gene3DG3DSA:2.40.330.101.3E-17770864IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-18772865IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-19773868IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014773867IPR003340B3 DNA binding domain
CDDcd100172.95E-11778864No hitNo description
PfamPF023622.0E-14778865IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MATSRIHPQF FHTLVHGFHT HFTIPESFFS KYVEGRSVAE LKSDVSDRTW EVKMSGRRFT  60
DGWKEFIVAN DFRIGDVVVV RYVGGSVFHF SDLGPNCSEI QRNEGKNLLK RRLHEVEFSS  120
NNGDVVDDEE LPREKRAKTN SEEAEAVSSS SSADNSCFVA FVTGLNLTTD TLYLPLHFTS  180
SNSIKRYCRK IVLRDGKERS WALGLEFNES SDTFYIRGWR NFCDENGQKA GGFFMFELVG  240
NGETPVLSFS TRESVSDRRQ RDCSEASKIE SVVTKLSSEV ENIAREGSKD ECSSLNSLMG  300
IEKKEYILKP RGSPYSSYSP CHKRFIKFTL PPDYVRIRNL SLAAPFVRDN GINKPGEICL  360
LDKDGRRWLT NLGVDKKGTT YLGKGWKDFV KANGLESGFT LKLIWEETIP VLSLCCAQSN  420
CDRELEEFLK AIEKKSCLID TRNIDKISND ENNEESRSQD KKKNHLKWRD STPSSDKQFV  480
TLTITPASFE RNRLCFSKNF ARENGINKPG IITLLGKDGI KYQTVLSLDN KTKGTMLLRT  540
GWKDFVKDNG LKTGDSFTLK LIWEDQTPVL SLCPSECSID REAGEGCSET NQKKSLPIEP  600
STCKNISKDK NIKDDNSKEK NNKEERRSVN RERNHRRVRN LTPSSQKQFV TLTITPSSVE  660
RNRLVLTAQF VRENNINKPG TICLLDTDGT KWLTKLQRDK KGTMSLGQGW QEFTEANNFK  720
LGESFTMKLT WEDTTPILSL LRTDFSYSNS NKEESIFSKP KSRDSSPAIE KRLVTLALTP  780
EDVKASKLIL PSQFMKANGI NKLGKITLWC ENGMEWSAYL LTRDGTVALG CGWKGFCEAN  840
GVQLGEPFTL EFIDKRDTTP VLKFSSPETK HKTFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1424s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639406.10.0B3 domain-containing protein REM13
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A1P8B2140.0A0A1P8B214_ARATH; B3 domain-containing protein REM13
STRINGCagra.1424s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]