PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1424s0006.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 439aa MW: 50026.3 Da PI: 9.1311

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1424s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.8	1.7e-12	6	92	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk l + s+ l++p f+ ++ g e++ t l++ s W+vk+ ++++ +t+GW+eF+ a++L+ gD+ +F+ + + Cagra.1424s0006.1.p 6 FFKPL--LPGFHSH-LTIPVGFFLKYieG-RDEQKSTAELTSdVSKIIWNVKI--DGQR----FTDGWEEFATAHDLRIGDIAIFRQE--RH 85 66666..5667777.**********64.44555577777759999**..8888....9********************43..34 PP E..EEEE CS B3 90 felvvkv 96 ++v++ Cagra.1424s0006.1.p 86 LAFHVTL 92 4446655 PP
2	B3	69.8	3.7e-22	135	221	4	90
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + +++ + ++l +p++f+++++ + ++ +++l++e+gr+W++kl + g +++++GW+ F++angLk+gD+++Fkl++r ++ Cagra.1424s0006.1.p 135 AKVAPSSIRYDLLLFPRPFVRANSRVINGFGEIVLMNEKGRTWTFKLHKKPACGNVYIRGGWRVFCDANGLKDGDTFTFKLIQRGGT 221 45678899999**********77777888************88888889*************************97444 PP
3	B3	50.6	3.4e-16	282	351	4	76
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 + +++++l+ + ++lpk f++e+g++ +++ +++l +e+grsW++ l r+ks+++ + +GW++F+ +ngL++ Cagra.1424s0006.1.p 282 ANISPSMLRYDTMYLPKWFMRENGIDGRCG-DMILLNEKGRSWTLDL--RRKSCGTAFLRGWRSFCLDNGLRA 351 5678999**************9987776.************..99999999999*********97 PP
4	B3	53.5	4.2e-17	351	435	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++p +f++++g++ke+ ++ l d++gr+W+ kl+ +s+r l +GWk+F +ang+k+++++ ++l++++e+++v+k+++k Cagra.1424s0006.1.p 351 AKMRFPIPFTRTNGINKET--KMALLDKQGRKWSTKLRSeGANSERLRLVGGWKGFLEANGVKANESIKLELIWEEETSCVLKFRSK 435 56899*******99655..8***********887889999**************************9999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.92E-15	3	103	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.461	3	96	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-18	3	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.81E-11	4	93	No hit	No description
SMART	SM01019	7.5E-18	6	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-7	14	84	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.7E-21	126	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-20	130	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.68E-21	132	226	No hit	No description
PROSITE profile	PS50863	15.453	132	230	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-26	133	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-21	134	223	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-14	272	351	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.44E-14	277	351	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.968	279	351	IPR003340	B3 DNA binding domain
CDD	cd10017	3.28E-13	279	351	No hit	No description
SMART	SM01019	1.9E-8	280	355	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-14	281	351	IPR003340	B3 DNA binding domain
CDD	cd10017	4.53E-14	346	433	No hit	No description
Pfam	PF02362	3.5E-16	352	435	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-14	352	435	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.097	353	435	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.16E-14	353	428	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.2E-11	356	436	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MANKHFFKPL LPGFHSHLTI PVGFFLKYIE GRDEQKSTAE LTSDVSKIIW NVKIDGQRFT 60 DGWEEFATAH DLRIGDIAIF RQERHLAFHV TLLGPSSCEL QYGSCLDQES NLEEQKKSPN 120 KEAETSSLDP SCFVAKVAPS SIRYDLLLFP RPFVRANSRV INGFGEIVLM NEKGRTWTFK 180 LHKKPACGNV YIRGGWRVFC DANGLKDGDT FTFKLIQRGG TRVLRLVPKE PVEEEANDVS 240 LSTEPECHED SNIGKIQKKM ETEKNLRRET ESSSLDTSCF VANISPSMLR YDTMYLPKWF 300 MRENGIDGRC GDMILLNEKG RSWTLDLRRK SCGTAFLRGW RSFCLDNGLR AKMRFPIPFT 360 RTNGINKETK MALLDKQGRK WSTKLRSEGA NSERLRLVGG WKGFLEANGV KANESIKLEL 420 IWEEETSCVL KFRSKVNL*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MANKHFFKPL LPGFHSHLTI PVGFFLKYIE GRDEQKSTAE LTSDVSKIIW NVKIDGQRFT  60
DGWEEFATAH DLRIGDIAIF RQERHLAFHV TLLGPSSCEL QYGSCLDQES NLEEQKKSPN  120
KEAETSSLDP SCFVAKVAPS SIRYDLLLFP RPFVRANSRV INGFGEIVLM NEKGRTWTFK  180
LHKKPACGNV YIRGGWRVFC DANGLKDGDT FTFKLIQRGG TRVLRLVPKE PVEEEANDVS  240
LSTEPECHED SNIGKIQKKM ETEKNLRRET ESSSLDTSCF VANISPSMLR YDTMYLPKWF  300
MRENGIDGRC GDMILLNEKG RSWTLDLRRK SCGTAFLRGW RSFCLDNGLR AKMRFPIPFT  360
RTNGINKETK MALLDKQGRK WSTKLRSEGA NSERLRLVGG WKGFLEANGV KANESIKLEL  420
IWEEETSCVL KFRSKVNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1424s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293928.2	0.0	putative B3 domain-containing protein REM15
Swissprot	O23076	1e-173	REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBL	R0FW44	0.0	R0FW44_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.1424s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	1e-175	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.1424s0006.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]