PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15036s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 175aa    MW: 20013.2 Da    PI: 10.7483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15036s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-051644230
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                          r+  n rE+ RR r+++ f+ L +l+ + 
  Cagra.15036s0026.1.p 16 RQQRNLREKERRMRMKHLFSILSSLVSPT 44
                          8899*********************9774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-111290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6831463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERARETGEG SSSSLRQQRN LREKERRMRM KHLFSILSSL VSPTRRLPVP QLIDQSVSYM  60
IRLKEKVNYL EEKKRALLGG EVQNRSQGSS LQPKLSIRSR DSTIEMNLVM DVNIKRVLLH  120
ELVSVFEQEG AQVMSANLQN LNNRTFYTII AQAIICRIGI DPSKIEERVM SIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15036s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070675e-93AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026845e-93CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306058.11e-122transcription factor bHLH168
SwissprotQ9XIJ11e-104BH168_ARATH; Transcription factor bHLH168
TrEMBLR0GT311e-120R0GT31_9BRAS; Uncharacterized protein
STRINGCagra.15036s0026.1.p1e-122(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.14e-92bHLH family protein