PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1504s0017.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 181aa    MW: 20194.3 Da    PI: 5.8467
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1504s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-062749123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC++C+k+F r+  L  H++ H
  Cagra.1504s0017.1.p 27 YKCKYCPKRFDRSQALGGHQNAH 49
                         9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.84E-72455No hitNo description
Gene3DG3DSA:3.30.160.601.7E-52553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1962754IPR007087Zinc finger, C2H2
PfamPF139128.4E-62752IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MFSSGLSDCS DISDDGSSTE SLENQKYKCK YCPKRFDRSQ ALGGHQNAHR KERELTKKRN  60
LGQLNQSGLD LYRSSFSYPY KFSKEYALPP GFEEPRYKAD RLENQTMKNE YDKYAESLGS  120
NFVGQSQPQP LFSPSSPLSL DLCLGTGKPQ TQPIEPTNAA DEMVGENEND GSPLSLSLKR  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1504s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290051.11e-122zinc finger protein KNUCKLES
TrEMBLR0H1661e-121R0H166_9BRAS; Uncharacterized protein
STRINGCagra.1504s0017.1.p1e-129(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.15e-42C2H2 family protein