PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1504s0056.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 246aa    MW: 27892.4 Da    PI: 5.5038
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1504s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.31.7e-1223105286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++ + +L+ea  ++  +l+ g+l++++W++v++ + +++g ++   + +qCk++++ l+k+yk +k+  +       st+++fd+l+
  Cagra.1504s0056.1.p  23 WSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADTVnSRHGDNVrakTDVQCKNRIDTLKKKYKSEKAKLSP------STWRFFDRLD 105
                          *************************************85566544122778*****************99996......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2321106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
METTPQSKAS GSHRPPLGRE DWWSEEATAT LVEAWGNRYV KLNHGNLRQN DWKDVADTVN  60
SRHGDNVRAK TDVQCKNRID TLKKKYKSEK AKLSPSTWRF FDRLDFLIGP VVKKSAGAVV  120
KPVPIVNPNH LNPAGSGSSL EDEDEDDDDD DEAGDWGFVA REHSRVEEVD LSEGSTCREL  180
ATAILKFGEV YEKIESKKQQ MMIELEKQRM EVTKEVELQR MNMLMEMQLE IEKSKLRKRG  240
LGSGM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1504s0056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288549.11e-158trihelix transcription factor ASIL2
SwissprotQ9LJG82e-30ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0FGL51e-156R0FGL5_9BRAS; Uncharacterized protein
STRINGCagra.1504s0056.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-136sequence-specific DNA binding transcription factors