PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1508s0136.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 242aa    MW: 27784.5 Da    PI: 5.6801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1508s0136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07124167755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Cagra.1508s0136.1.p 124 VAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 167
                          677*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.23E-7115171No hitNo description
SuperFamilySSF474594.06E-11116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.43117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10120181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-5125167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNQSLDLDEA LSPSLFEFSH LYEPFLPPQD IFLPSPKTEV FNESHDLDAF FPTRKHQKLI  60
NSSFHFNSDE PFFPSSNPNL LDSYITETSN FSEFLVPDFS PAFKVGWTDS KDDTKKPEVS  120
AQSVAARKRR RRITEKTQEL GKLIPGSQKH NTAEMFHAAA KYVKFLQAQI EILQLKQTKM  180
QTWESSEVER EMQFLLASQE IQEKLSTEEV CVVPKEMVQV LKAEGCILRN PRISRDLNKL  240
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126130RKRRR
2127132KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1508s0136.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305895.21e-172transcription factor bHLH52
SwissprotQ9SA821e-121BH052_ARATH; Transcription factor bHLH52
TrEMBLR0INR81e-170R0INR8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1508s0136.1.p1e-177(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-123bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]