PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1508s0155.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YA
Protein Properties Length: 194aa    MW: 21676.1 Da    PI: 8.9099
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1508s0155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.31.3e-33102158158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQy++Il+RRq+Rakle+++k+ +ksrkpylheSRh hA+rRpRg+gGrF
  Cagra.1508s0155.1.p 102 EEPVFVNAKQYHGILRRRQSRAKLESQNKV-IKSRKPYLHESRHLHAIRRPRGCGGRF 158
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.9E-38100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.169101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-28103158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-24104126IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860106126IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-24135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSIHQLSEN IESHEKQEQR DSHFQPPTPP GRHYESIATS LVYSEPVPHP GSTHSMAPGQ  60
YPYPDPYYRS IFAPPPQPYA GVHIQLMGMQ QQGVPLPSDA VEEPVFVNAK QYHGILRRRQ  120
SRAKLESQNK VIKSRKPYLH ESRHLHAIRR PRGCGGRFLN VKKDDEHHED SHEDNSNLSS  180
GKSAMAASSG GTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-22101170171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1508s0155.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305656.11e-140nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP11e-118NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLR0I8981e-139R0I898_9BRAS; Uncharacterized protein
STRINGCagra.1508s0155.1.p1e-140(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-103nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]