PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15158s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 401aa    MW: 44914.6 Da    PI: 9.0057
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15158s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3642.3e-2057146495
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           vl++  +lk + l+lp +f++++++k ++s +++l+de+ rsW + l+++k s+++++++GWk+F+++ng +eg +++Fkl+++ + ++
  Cagra.15158s0006.1.p  57 VLVTDANLKADSLYLPQDFTSSNDLK-RKSCKIVLKDEEERSWAMDLRFNKVSDTCYISRGWKHFCDENGKNEGSVFTFKLMNNGD-TP 143
                           57788899999************988.6788**************************************************98544.45 PP

                           EEE CS
                    B3  93 vvk 95 
                           +++
  Cagra.15158s0006.1.p 144 LLS 146
                           655 PP
2B360.72.4e-19178270197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+lks+r++lp +f++e+g++  +++++tl  ++g +W v+l  r +sgr+ l+kG k+F kangLk g++++ +l++ ++
  Cagra.15158s0006.1.p 178 FVTLTLTNDSLKSSRVYLPLPFVRENGMN--NPRMVTLLGKDGIRWAVNL-LRESSGRMSLGKGMKDFSKANGLKIGESFTMELKW-EN 262
                           7788899*******************999..5669***************.799999***************************99.77 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                           +++v+++f
  Cagra.15158s0006.1.p 263 ATPVLSLF 270
                           77888876 PP
3B359.27.1e-19280373198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+l+++rl lp +f++e++++k++  t+tl  ++g +W  +l  + ++gr+ l+kGW+eF+ angL+ g +++++ ++ ++
  Cagra.15158s0006.1.p 280 FVTLTLTHDSLNNNRLGLPLSFMRENNMNKPG--TMTLLGKDGTKWIANL-LQESRGRMSLGKGWREFAIANGLEIGVSFTLESIW-ED 364
                           7788899*******************999766..8***************.7999999*************************999.88 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           +++++++f+
  Cagra.15158s0006.1.p 365 ATPMLSLFS 373
                           889998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-2046144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1852146IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4854151IPR003340B3 DNA binding domain
SMARTSM010194.9E-2255151IPR003340B3 DNA binding domain
CDDcd100175.40E-1655149No hitNo description
PfamPF023629.6E-1957144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-19168267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19174270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-17177271No hitNo description
SMARTSM010191.9E-26178273IPR003340B3 DNA binding domain
PfamPF023621.7E-18178270IPR003340B3 DNA binding domain
PROSITE profilePS5086314.015178273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-18275367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19278371IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-16280373No hitNo description
SMARTSM010192.0E-26280375IPR003340B3 DNA binding domain
PfamPF023625.5E-19280373IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846280375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MCYTGNNISK KRNHQTEEGV AHQDNNTVLG RGKKVRTNKS EFKAGSSSSD DDNSFFVLVT  60
DANLKADSLY LPQDFTSSND LKRKSCKIVL KDEEERSWAM DLRFNKVSDT CYISRGWKHF  120
CDENGKNEGS VFTFKLMNNG DTPLLSVLPI KSDNGRTQGD KNSSQSYRDS TSPNNNRFVT  180
LTLTNDSLKS SRVYLPLPFV RENGMNNPRM VTLLGKDGIR WAVNLLRESS GRMSLGKGMK  240
DFSKANGLKI GESFTMELKW ENATPVLSLF CKEYRIPNKF VTLTLTHDSL NNNRLGLPLS  300
FMRENNMNKP GTMTLLGKDG TKWIANLLQE SRGRMSLGKG WREFAIANGL EIGVSFTLES  360
IWEDATPMLS LFSIVESTSD KRQQGECCSN ASEEEKSIST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15158s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639414.10.0B3 domain-containing protein REM12-like isoform X1
SwissprotP0CAP41e-104REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A1J3JLQ31e-179A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12
STRINGCagra.15158s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-103B3 family protein