PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15158s0006.3.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 302aa    MW: 33786.4 Da    PI: 9.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15158s0006.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1979171197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+lks+r++lp +f++e+g++  +++++tl  ++g +W v+l  r +sgr+ l+kG k+F kangLk g++++ +l++ ++
  Cagra.15158s0006.3.p  79 FVTLTLTNDSLKSSRVYLPLPFVRENGMN--NPRMVTLLGKDGIRWAVNL-LRESSGRMSLGKGMKDFSKANGLKIGESFTMELKW-EN 163
                           7788899*******************999..5669***************.799999***************************99.77 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                           +++v+++f
  Cagra.15158s0006.3.p 164 ATPVLSLF 171
                           77888876 PP
2B3604.2e-19181274198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++d+l+++rl lp +f++e++++k++  t+tl  ++g +W  +l  + ++gr+ l+kGW+eF+ angL+ g +++++ ++ ++
  Cagra.15158s0006.3.p 181 FVTLTLTHDSLNNNRLGLPLSFMRENNMNKPG--TMTLLGKDGTKWIANL-LQESRGRMSLGKGWREFAIANGLEIGVSFTLESIW-ED 265
                           7788899*******************999766..8***************.7999999*************************999.88 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           +++++++f+
  Cagra.15158s0006.3.p 266 ATPMLSLFS 274
                           889998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.095152IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-7247IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7345IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-6445IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1969168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1975171IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-1878172No hitNo description
SMARTSM010191.9E-2679174IPR003340B3 DNA binding domain
PfamPF023629.9E-1979171IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01579174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18176269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-19179272IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-26181276IPR003340B3 DNA binding domain
PfamPF023623.2E-19181274IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846181276IPR003340B3 DNA binding domain
CDDcd100173.88E-17181274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDLRFNKVSD TCYISRGWKH FCDENGKNEG SVFTFKLMNN GDTPLLSVLP IKSDNGRTQG  60
DKNSSQSYRD STSPNNNRFV TLTLTNDSLK SSRVYLPLPF VRENGMNNPR MVTLLGKDGI  120
RWAVNLLRES SGRMSLGKGM KDFSKANGLK IGESFTMELK WENATPVLSL FCKEYRIPNK  180
FVTLTLTHDS LNNNRLGLPL SFMRENNMNK PGTMTLLGKD GTKWIANLLQ ESRGRMSLGK  240
GWREFAIANG LEIGVSFTLE SIWEDATPML SLFSIVESTS DKRQQGECCS NASEEEKSIS  300
T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15158s0006.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639414.10.0B3 domain-containing protein REM12-like isoform X1
SwissprotP0CAP46e-80REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A1J3JLQ31e-149A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12
STRINGCagra.15158s0006.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.13e-82B3 family protein