PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15158s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 823aa    MW: 92733.8 Da    PI: 8.845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15158s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-2187177598
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            + +  ++++rl+lp +f++e+g++k++  ++ l  ++g +W  +l  + ++gr++l++GWk+FvkangLk+g++v+++l + +++++v
  Cagra.15158s0010.1.p  87 RLAPVDGRHCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANLLSESNRGRMTLGDGWKSFVKANGLKTGESVTLRLYW-EDTTPV 172
                           55667889***************99776..8***************999999***************************999.888899 PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           ++++ 
  Cagra.15158s0010.1.p 173 LSLCP 177
                           99885 PP
2B365.76.8e-21250340498
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                             +++d l++grl++p +f++e++++k++  ++tl  ++g +W   l    k+gr+ l+kGWkeF+kangLk+ D+++++l++ +++++
  Cagra.15158s0010.1.p 250 LKITPDCLRHGRLRIPLQFMTENSMNKPG--EITLLGKDGAKWLASLL-LEKRGRMSLGKGWKEFAKANGLKTDDSITLELIW-ENATP 334
                           56789******************999766..8***************5.66667889**************************.78888 PP

                           EEEEE- CS
                    B3  93 vvkvfr 98 
                            +k++r
  Cagra.15158s0010.1.p 335 ILKLLR 340
                           888876 PP
3B360.92.1e-19582671396
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           + ++++d+l++grl+lp +f++e+g++k++  ++t+  ++g +W v l    ++gr  l+kGWk+ +k+ngLk+gD+++++ ++ ++++
  Cagra.15158s0010.1.p 582 TLTITPDSLRQGRLRLPLEFMTENGMNKPG--EITVLGKDGVKWLVSL-LLERRGRLSLGKGWKDIAKENGLKTGDSITLESIW-EDAS 666
                           56789********************99766..8***************.56667899************************999.7777 PP

                           .EEEE CS
                    B3  92 lvvkv 96 
                           +++k+
  Cagra.15158s0010.1.p 667 PMLKL 671
                           88776 PP
4B344.52.7e-14731819596
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                           ++ +   + g+l lp +f++ +g++k++  ++tl  + g +W  +l    ++g++v ++GWk+F++ang+  g +++++++ + ++++ 
  Cagra.15158s0010.1.p 731 TLAPEDVRDGNLHLPSQFMRVNGINKPG--QITLLGRGGMKWFAYL--LSRDGTVVVGNGWKGFCEANGVMLGQSFILEFIPKvNNTNH 815
                           44444555566************99877..6***************..99999**************************9865466666 PP

                           EEEE CS
                    B3  93 vvkv 96 
                           v+k+
  Cagra.15158s0010.1.p 816 VFKF 819
                           6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0029003238IPR003006Immunoglobulin/major histocompatibility complex, conserved site
Gene3DG3DSA:2.40.330.105.6E-2277178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2282180IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-2983179IPR003340B3 DNA binding domain
PfamPF023625.3E-2183177IPR003340B3 DNA binding domain
PROSITE profilePS5086314.80483179IPR003340B3 DNA binding domain
CDDcd100179.76E-2093177No hitNo description
Gene3DG3DSA:2.40.330.101.2E-19241336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-21243338IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-18246340No hitNo description
PROSITE profilePS5086314.748247342IPR003340B3 DNA binding domain
SMARTSM010193.9E-30247342IPR003340B3 DNA binding domain
PfamPF023621.1E-20249340IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-18574668IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20576669IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-16579672No hitNo description
PROSITE profilePS5086314.579580675IPR003340B3 DNA binding domain
SMARTSM010199.7E-27580675IPR003340B3 DNA binding domain
PfamPF023621.5E-18581671IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-17720819IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-19721817IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-12726820No hitNo description
SMARTSM010197.6E-17727821IPR003340B3 DNA binding domain
PfamPF023621.5E-13727820IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126727822IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MMFQVADHQD NNIEFQRNKK LKQTNHETEA DYSCLVTHVT ASSQHTDALY LPQDLTSSNG  60
LTRKCSKSPR QIFSSYSSSE KQFVTFRLAP VDGRHCRLRL PMQFTRENGI NKPGKIYLLG  120
KDGSKWLANL LSESNRGRMT LGDGWKSFVK ANGLKTGESV TLRLYWEDTT PVLSLCPEVY  180
NTETRVGEEC LDASEKESFP IEPSSKVEII KDDINKDKNT KDESSSWERE NHHMRCMDLT  240
SPSQNHILTL KITPDCLRHG RLRIPLQFMT ENSMNKPGEI TLLGKDGAKW LASLLLEKRG  300
RMSLGKGWKE FAKANGLKTD DSITLELIWE NATPILKLLR IESSSGRGES GFSKESLTME  360
PNRGNKTKKA DNNREESKMY PPRCRESTTT IQNQFMALTF PCNTISLCAH DPQTREAFIF  420
RHEGDNMLHI SDLGHNCFGM RDVTTPSSNN DHDRISNISM KMHPHLSQEA GFSSYDGDDH  480
GNFEGPSKKV KKNNPETQED YSSDHSRFVT TSSLHANALS LAVKESLPIK PSNVRKISEY  540
DNNKDENSRE ANNLKASSSC EREKNHLRCI ASISPSQNRY VTLTITPDSL RQGRLRLPLE  600
FMTENGMNKP GEITVLGKDG VKWLVSLLLE RRGRLSLGKG WKDIAKENGL KTGDSITLES  660
IWEDASPMLK LLHIESSSVS CFTDASSGHK TREVKNIREE SSSSPKLKKR TYCPRKRDSS  720
SDIQNRFLTL TLAPEDVRDG NLHLPSQFMR VNGINKPGQI TLLGRGGMKW FAYLLSRDGT  780
VVVGNGWKGF CEANGVMLGQ SFILEFIPKV NNTNHVFKFY SN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15158s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639408.10.0B3 domain-containing protein REM-like 1 isoform X1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLR0FUN00.0R0FUN0_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.15158s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]