PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15225s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 247aa    MW: 28109.5 Da    PI: 5.3227
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15225s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.23.3e-23106166259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg++WrKYGqK++k s + rsYYrC++a   +C+++k+v+  ++ p v+ + Y g+H+++
  Cagra.15225s0001.1.p 106 DDGFAWRKYGQKTIKTSVHQRSYYRCAYAkdrNCNATKRVQMIKDSPPVFRTSYMGQHTCK 166
                           8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.452100168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-24100166IPR003657WRKY domain
SuperFamilySSF1182903.14E-23103166IPR003657WRKY domain
SMARTSM007741.3E-32105167IPR003657WRKY domain
PfamPF031061.8E-23106166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFSNIDHKAL AALLHGQGCA NNLKTLLDNR EISSVLIEPL INTILDSFSL ALSFVDSPNP  60
PQLLESSSSQ NMASLVHQRS SKKRICGIKD MELKNYRDES PNPRPDDGFA WRKYGQKTIK  120
TSVHQRSYYR CAYAKDRNCN ATKRVQMIKD SPPVFRTSYM GQHTCKAFEV YDETYGSEMI  180
QFDQVVSELV MPQLASTDHQ ATTIDDDKAT DHTMNQECDI NDFLVDYDQF WQNEFPSFSY  240
GDLVFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-16106166969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15225s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644077.11e-167probable WRKY transcription factor 63
SwissprotQ9C6H51e-123WRK63_ARATH; Probable WRKY transcription factor 63
TrEMBLR0GDS11e-156R0GDS1_9BRAS; Uncharacterized protein
STRINGCagra.15225s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.11e-125ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]