PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15509s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 275aa    MW: 31599.9 Da    PI: 9.727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15509s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192067148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
  Cagra.15509s0001.1.p 20 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67
                          79********************************************97 PP
2Myb_DNA-binding53.36.4e-1773117147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Cagra.15509s0001.1.p  73 RGQITPHEESIIIELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                           7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3251567IPR017930Myb domain
SuperFamilySSF466892.85E-3019114IPR009057Homeodomain-like
SMARTSM007171.1E-161969IPR001005SANT/Myb domain
PfamPF002492.3E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-242174IPR009057Homeodomain-like
CDDcd001674.87E-122267No hitNo description
PROSITE profilePS5129425.01868122IPR017930Myb domain
SMARTSM007172.6E-1572120IPR001005SANT/Myb domain
PfamPF002494.0E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2475121IPR009057Homeodomain-like
CDDcd001671.19E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSWWGMKGGG WGMVEEVWRK GPWTAEEDRL LIEYVRVHGE GRWNSVARLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ESIIIELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KAKPTTNNVE KTKSRLLKRQ QFKQQRELEM QQEHQLFQFD QLDMKKIISL LEDNNISSSS  180
DCGSGGNVFY APHQITHSSK PFGYNPNLLE EQLQGRLAPV NILDANTTNE DNAIWDGLWN  240
MDIVDGHGGM SVVAATSACG PRKPYFHNLV IPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15509s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1337050.0AY133705.1 Arabidopsis thaliana clone C103160 putative myb protein (At4g13480) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285781.20.0transcription repressor MYB6
TrEMBLR0GP770.0R0GP77_9BRAS; Uncharacterized protein
STRINGCagra.15509s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-140myb domain protein 79