PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1561s0019.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 204aa    MW: 23252.5 Da    PI: 10.1903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1561s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-162673148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l +++  +G g W+++a+  g++Rt+k+c++rw++yl
  Cagra.1561s0019.1.p 26 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 73
                         79********************************************97 PP
2Myb_DNA-binding56.56.3e-1879122146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
  Cagra.1561s0019.1.p  79 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 122
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8642173IPR017930Myb domain
SuperFamilySSF466892.24E-2924120IPR009057Homeodomain-like
SMARTSM007179.4E-122575IPR001005SANT/Myb domain
PfamPF002491.9E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-212780IPR009057Homeodomain-like
CDDcd001671.43E-82873No hitNo description
PROSITE profilePS5129424.74974128IPR017930Myb domain
SMARTSM007172.1E-1678126IPR001005SANT/Myb domain
PfamPF002492.1E-1679122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2581128IPR009057Homeodomain-like
CDDcd001679.78E-1383122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
METMKKKGRG KATITSQKEE EGTVRKGPWT MEEDFILFNY ILNHGEGLWN SVAKASGLKR  60
TGKSCRLRWL NYLRPDVRRG NITAEEQLLI IQLHAKLGNR WSKIAKHLPG RTDNEIKNFW  120
RTKIQRHMKV PPKNMMHQHC PGNSQSSGMT TTDQGSSGKA IDMAESFSPA TTTFNVVEQS  180
NENYWNVEDL WPVHLLNGDH HVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262612627126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1561s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180910.0AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055740.0BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300020.11e-151transcription factor MYB57
SwissprotQ9SSA11e-133MYB57_ARATH; Transcription factor MYB57
TrEMBLR0I8T71e-150R0I8T7_9BRAS; Uncharacterized protein
STRINGCagra.1561s0019.1.p1e-152(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-136myb domain protein 57