PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1569s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 534aa MW: 59701.7 Da PI: 8.5405

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1569s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	357	402	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A e ++sLq Cagra.1569s0004.1.p 357 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTVAREQLSSLQ 402 8899******************97.....8************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-15	350	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.761	352	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.65E-11	354	403	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-14	356	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	357	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-12	358	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MDAFFLMDDP NTRKQLVGSL AQAFRCVYVC LWSYYFPRPS NYLIAMDGYY NEASEEPSSS 60 SSVGLARSLF LEYRQSVIPL QNGHVPSMAI MNNLPYVEIR QQEIQRLAYN DAQRLFYQVT 120 KIITTVIFMG CRSGEIELGM TYDATNMKIE ASLREWFPED FNRNSSPVNS VDHLRPPPHP 180 SSSSSSLSPN NISEYSSLLF PLIPKPSTTT DAVNVPVHPL LAPTNMIHHQ LQQQEPLFRN 240 RQREEEAMTQ AILAVLTGPG PGPSSPPSTS SSPLRKGRAT AFKRYYCTIN GGGRGPPQSS 300 VLKQGMMKRA VSFYTRLNIH RRERLARENA TTGGDGSSGS GGGGRYTSGP SATQLHHMIS 360 ERKRREKLNE SFQALRSLLP PGTKKDKASV LTVAREQLSS LQEGISKLLE RNRELEAKLA 420 GEKETENDLQ PDEMFNVRIR HVPESTSRER ILDLRVVLRG DIIRVEDLMI RLLEFLKQIN 480 NVSVASIEAQ TQARADGDSS IVLVSLRLKI IEGEWDESAF QEAVRRVVAD LAD*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MDAFFLMDDP NTRKQLVGSL AQAFRCVYVC LWSYYFPRPS NYLIAMDGYY NEASEEPSSS  60
SSVGLARSLF LEYRQSVIPL QNGHVPSMAI MNNLPYVEIR QQEIQRLAYN DAQRLFYQVT  120
KIITTVIFMG CRSGEIELGM TYDATNMKIE ASLREWFPED FNRNSSPVNS VDHLRPPPHP  180
SSSSSSLSPN NISEYSSLLF PLIPKPSTTT DAVNVPVHPL LAPTNMIHHQ LQQQEPLFRN  240
RQREEEAMTQ AILAVLTGPG PGPSSPPSTS SSPLRKGRAT AFKRYYCTIN GGGRGPPQSS  300
VLKQGMMKRA VSFYTRLNIH RRERLARENA TTGGDGSSGS GGGGRYTSGP SATQLHHMIS  360
ERKRREKLNE SFQALRSLLP PGTKKDKASV LTVAREQLSS LQEGISKLLE RNRELEAKLA  420
GEKETENDLQ PDEMFNVRIR HVPESTSRER ILDLRVVLRG DIIRVEDLMI RLLEFLKQIN  480
NVSVASIEAQ TQARADGDSS IVLVSLRLKI IEGEWDESAF QEAVRRVVAD LAD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	365	ERKRRE
2	361	366	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1569s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024035	1e-175	AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBank	CP002688	1e-175	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023633474.1	0.0	putative transcription factor bHLH041
Swissprot	Q9LTS4	0.0	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A1P8BAL1	0.0	A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRING	Cagra.1569s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.1569s0004.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]