PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.15745s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 259aa    MW: 29400.2 Da    PI: 9.2996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.15745s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-153075147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g WT+  d++l+++v+ +G ++W++Ia++m   Rt+k+c+ rw++ 
  Cagra.15745s0001.1.p 30 KGHWTQSQDLKLIELVEAYGLENWDLIAEKME-ARTGKSCRFRWFNQ 75
                          789*****************************.***********996 PP
2Myb_DNA-binding50.54.7e-1683126247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T eE+++ v a++ +G++ W++Ia+++  gRt+ ++k++w+ +
  Cagra.15745s0001.1.p  83 TPFTVEEEKIMVSAHNFYGNK-WSKIAKHLK-GRTDIDVKNHWNAH 126
                           69*******************.********9.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-2829123IPR009057Homeodomain-like
PROSITE profilePS5129412.7282976IPR017930Myb domain
SMARTSM007176.9E-132978IPR001005SANT/Myb domain
PfamPF002491.1E-143075IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223183IPR009057Homeodomain-like
CDDcd001671.12E-123374No hitNo description
PROSITE profilePS5129422.82977131IPR017930Myb domain
SMARTSM007176.8E-1481129IPR001005SANT/Myb domain
PfamPF002493.4E-1382126IPR001005SANT/Myb domain
CDDcd001677.49E-1184127No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2084130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
RPVNGVGANN ALPLRETQQE ERKSPYRGSK GHWTQSQDLK LIELVEAYGL ENWDLIAEKM  60
EARTGKSCRF RWFNQLDPTI DKTPFTVEEE KIMVSAHNFY GNKWSKIAKH LKGRTDIDVK  120
NHWNAHMNRT AWRPKTKPNR RLFTTSLNPY GYSVPGLVQF LSFLDIVWFT GNVSYEGIGI  180
KNCSSNMRNE ETTNLYPHPR MPVQLSGHHH HFPIFPASGS LALSTELSIS QPSSSPEAAD  240
VMIRKTPEFI DFLGVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30301297106B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113KHLKGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.15745s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284977.21e-158transcription factor MYB117
TrEMBLR0GYZ61e-132R0GYZ6_9BRAS; Uncharacterized protein
STRINGCagra.15745s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.13e-52myb domain protein 89