PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1632s0036.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 593aa    MW: 66633.3 Da    PI: 4.8514
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1632s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.91.8e-1342235923374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s+e+laa+++++ev+P++k
  Cagra.1632s0036.1.p 223 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP---SDERLAAMQVLFEVCPCFK 309
                          78*****************************************************************9...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          f++l+aN aI ea++gee+vHiiDfdi+qG Q+++L++++a+ +++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  gv+f+f++
  Cagra.1632s0036.1.p 310 FGFLAANGAIIEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELSGKRPRLRLTGIDDPESVqrSIGGLRIIGLRLEQLAKDHGVSFKFKA 399
                          ***********************************************************9988899************************ PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           + ++++ +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+f+s
  Cagra.1632s0036.1.p 400 -LPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFIEAYEYYSAVFES 488
                          .599************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s +++++ + l+++ + + y+++ee g+l +
  Cagra.1632s0036.1.p 489 LDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSARVVNNLQNLIKQQYCNKYKLKEEMGELHF 578
                          ***************************************************************************888************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          +W++++L+++SaWr
  Cagra.1632s0036.1.p 579 CWEEKSLIVASAWR 592
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.355195572IPR005202Transcription factor GRAS
PfamPF035146.1E-132223592IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVEQTLVREQ IKARIMSLVR SAEPSSYRNP KLYSLNENGN NIGVTSAQIF DQDRSKNPCL  60
TDDSYPSQSY EKYFIDSPTD EFVQHPVGSG TSVSSFGSLD SFPSQSRPVL GCSMEFQLPF  120
DSTSTSSTRL LGDYQAVSYS PGMDVVEEFD EQMRSKIQEL ERALLGDEDD KMIGIDNLME  180
IDNEWSYQNE SEQHQDSPKE SSSADSNSHV SSKEVVSQTT PKQILISCAR ALSEGKSEEA  240
LSMVNELRQI VSIQGDPSQR IAAYMVEGLA ARMAASGKFI YRALKCKEPP SDERLAAMQV  300
LFEVCPCFKF GFLAANGAII EAIKGEEEVH IIDFDINQGN QYMTLIRSIA ELSGKRPRLR  360
LTGIDDPESV QRSIGGLRII GLRLEQLAKD HGVSFKFKAL PSKTSIVSPS TLGCKPGETL  420
IVNFAFQLHH MPDESVTTVN QRDELLHMVK SLNPKLVTVV EQDVNTNTSP FFSRFIEAYE  480
YYSAVFESLD MTLPRESQER MNVERQCLAR DIVNIVACEG EERIERYEAA GKWRARMMMA  540
GFNPKPMSAR VVNNLQNLIK QQYCNKYKLK EEMGELHFCW EEKSLIVASA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-572235926375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1632s0036.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankAY0458330.0AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBankAY0844920.0AY084492.1 Arabidopsis thaliana clone 109490 mRNA, complete sequence.
GenBankAY0966260.0AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307071.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLR0IBZ20.0R0IBZ2_9BRAS; Uncharacterized protein
STRINGCagra.1632s0036.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]