PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1642s0060.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 726aa MW: 78826.3 Da PI: 6.0403

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1642s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.6	2.7e-13	228	289	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ k+ r+++NRe+A+ sRqRKk ++eeLeekv ++ + ++L +++ e a+l+++ Cagra.1642s0060.1.p 228 EEDEKKKARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKISYFMAENATLRQQ 289 678899******************************************99999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-16	228	292	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-11	229	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.3	230	290	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-17	232	290	No hit	No description
SuperFamily	SSF57959	4.82E-12	232	290	No hit	No description
CDD	cd14704	2.03E-21	233	284	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MAEPIMEQPP PPAPDPNSTH PPPPPSDFDS ISIPPFDDQF YHPGSDQTPI GELMSDLGFP 60 DGEFELTFDG MDDLYFPAEN ESFLIPVNTS SQEQFGDFTP DSEGSGISGD PKDVFKNITT 120 SGCSNRESPR DSDDRCSGAD PSLDLPTPLS SQGSGNCASD VSEATNESSP KSRNVVVDQK 180 VKVEEAATTT SITKRKKEIE EDLSGESRSS KYRRSGEEDI DASAVTGEED EKKKARLMRN 240 RESAQLSRQR KKHYVEELEE KVRNMHSTIT DLNGKISYFM AENATLRQQL GGNGMCPPHH 300 PPPPMGMYPP MAPMPYPWMP CPPYMVKQQG SQVPLIPIPR LKPQNPLGTS KAKKSESKKS 360 EAKTKKVASI SFLGLLFCLF LFGALAPIVN VNYGGISGAF YGNYRPNYIT DQIYSQHRDR 420 VLDTSRSGAG TGVSNSNGMD CGRDSDRGTR NNISATESSV PPGNGSEPLV ASLFVPRNDK 480 LVKIDGNLII NSILASEKAV ASRKASESNE RKADLVIPKD YSPALPLPDV GRTEEMAKHL 540 YRSKTEKQKA LSSGSADSLK DQFKTKAANG EMQQWFREGV AGPMFSSGMC TEVFQFDVSS 600 TSGAIIPASP ATNVSAEHSK NTTDTRKRKN RRILRGLPIP LPGSDFNLTK EHQRNSSSKE 660 IKPASSMVVS VLVDPREGGD GDIDGMIGGP KSLSRVFVVV LLDSAKYVTY SCVLPRSGAP 720 HLVTT*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MAEPIMEQPP PPAPDPNSTH PPPPPSDFDS ISIPPFDDQF YHPGSDQTPI GELMSDLGFP  60
DGEFELTFDG MDDLYFPAEN ESFLIPVNTS SQEQFGDFTP DSEGSGISGD PKDVFKNITT  120
SGCSNRESPR DSDDRCSGAD PSLDLPTPLS SQGSGNCASD VSEATNESSP KSRNVVVDQK  180
VKVEEAATTT SITKRKKEIE EDLSGESRSS KYRRSGEEDI DASAVTGEED EKKKARLMRN  240
RESAQLSRQR KKHYVEELEE KVRNMHSTIT DLNGKISYFM AENATLRQQL GGNGMCPPHH  300
PPPPMGMYPP MAPMPYPWMP CPPYMVKQQG SQVPLIPIPR LKPQNPLGTS KAKKSESKKS  360
EAKTKKVASI SFLGLLFCLF LFGALAPIVN VNYGGISGAF YGNYRPNYIT DQIYSQHRDR  420
VLDTSRSGAG TGVSNSNGMD CGRDSDRGTR NNISATESSV PPGNGSEPLV ASLFVPRNDK  480
LVKIDGNLII NSILASEKAV ASRKASESNE RKADLVIPKD YSPALPLPDV GRTEEMAKHL  540
YRSKTEKQKA LSSGSADSLK DQFKTKAANG EMQQWFREGV AGPMFSSGMC TEVFQFDVSS  600
TSGAIIPASP ATNVSAEHSK NTTDTRKRKN RRILRGLPIP LPGSDFNLTK EHQRNSSSKE  660
IKPASSMVVS VLVDPREGGD GDIDGMIGGP KSLSRVFVVV LLDSAKYVTY SCVLPRSGAP  720
HLVTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269\|PubMed:17662035, ECO:0000269\|PubMed:20876872}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1642s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY136295	0.0	AY136295.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds.
GenBank	BT000408	0.0	BT000408.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293762.1	0.0	bZIP transcription factor 17
Swissprot	O22208	0.0	BZP17_ARATH; bZIP transcription factor 17
TrEMBL	R0HN45	0.0	R0HN45_9BRAS; Uncharacterized protein
STRING	Cagra.1642s0060.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8881	27	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.1642s0060.1.p

Publications ? help Back to Top
Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Sagor GH, et al. The polyamine spermine induces the unfolded protein response via the MAPK cascade in Arabidopsis. Front Plant Sci, 2015. 6: p. 687 [PMID:26442007] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kim JS,Yamaguchi-Shinozaki K,Shinozaki K ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation. Plant Physiol., 2018. 176(3): p. 2221-2230 [PMID:29367234] Cifuentes-Esquivel N, et al. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem., 2018. 119(8): p. 6857-6868 [PMID:29693271] Guan P, et al. SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance. Plant Physiol., 2018. 178(3): p. 1390-1405 [PMID:30287478]