PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1642s0072.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 252aa MW: 28299.1 Da PI: 9.6256

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1642s0072.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.7	8e-16	181	225	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ +l+ Cagra.1642s0072.1.p 181 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLR-RLK 225 79************************************9998.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-13	174	223	No hit	No description
SMART	SM00338	2.4E-12	177	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.197	179	223	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.81E-22	181	226	No hit	No description
SuperFamily	SSF57959	6.88E-10	181	223	No hit	No description
Pfam	PF00170	6.6E-13	181	223	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGSIRGNIEE PISQSLTRQN SLYSLKLHEV QTHLGSSGKP LGSMNLDELL KTVLSPAEEG 60 LVRQGSLTLP RDLSKKTVDE VWRDIQQDKN GTTTTHKQPT LGEITLEDLL LKAGVVTETI 120 VPQENVVNIA SHGQWVEYHQ PGQQQGFMSY PVCEMGGLSD TPQAPGRKRV AGEIVEKTVE 180 RRQKRMIKNR ESAARSRARK QAYTHELEIK VSRLEEENEK LRRLKEAERI LPSEPPPDPK 240 WKLRRTNSAS L*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1642s0072.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004261	1e-159	AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence.
GenBank	AF334209	1e-159	AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBank	AY084668	1e-159	AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBank	BT025175	1e-159	BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.
GenBank	CP002685	1e-159	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294842.1	1e-180	ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	1e-169	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	R0HR06	1e-179	R0HR06_9BRAS; Uncharacterized protein
STRING	Cagra.1642s0072.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-156	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.1642s0072.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]