PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.16435s0008.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NF-YC

Protein Properties

Length: 292aa MW: 33104 Da PI: 5.4577

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.16435s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.6	5.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t+ ++++v+r ++fdfl ++v + Cagra.16435s0008.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.31E-19	4	99	IPR009072	Histone-fold
Pfam	PF00808	4.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGHSQGH ADVPMDDRNI SKRRKPQDDE 120 INDSDEDLKK TKVHEMGHAG PSGRGRGRGR GRGRGRSAKT AERELFHREM EIEPTILVAP 180 QLTQEEIKMH APPQQHGSEK KDVDERFNHT KQELESPDDT NSGLGRGFDL NSQSLDIEIK 240 PPVITASREE MKPEEYPCWS IPDMANIDPM QVANMSKRLD EDEEDYDEEE S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	154	RGRGRGRGRG
2	145	155	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.16435s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006287977.2	0.0	dr1-associated corepressor
TrEMBL	R0H7M7	0.0	R0H7M7_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.16435s0008.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-100	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Cagra.16435s0008.1.p