PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1655s0054.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 200aa    MW: 22564.8 Da    PI: 8.8143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1655s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-162468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +++++E++ +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ 
  Cagra.1655s0054.1.p 24 RSKFSPQEEQEIIKFHALLGNR-WSVIAKQIP-NRTDHDIKNHWNSC 68
                         789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.205118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.8E-11430IPR009057Homeodomain-like
SuperFamilySSF466893.51E-21576IPR009057Homeodomain-like
PROSITE profilePS5129424.3651973IPR017930Myb domain
SMARTSM007173.6E-142371IPR001005SANT/Myb domain
PfamPF002497.3E-152468IPR001005SANT/Myb domain
CDDcd001671.09E-102666No hitNo description
Gene3DG3DSA:1.10.10.602.8E-193173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
TGLQRCGKSC RLRWLNYLRP GIKRSKFSPQ EEQEIIKFHA LLGNRWSVIA KQIPNRTDHD  60
IKNHWNSCLK KRLAKGRTDP MMTPEPALVT VDEATSTSTR SPSPAPSTTF SSTGFARLLN  120
KLAAGIASRK YRLDKIKMVI LTEQPREASA KENMLITMEE EDLITCFMDI DEKLSTASFC  180
ELPCDDSTTY SYATSDWLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2057340108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1655s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298432.11e-141transcription factor MYB106
TrEMBLR0I0D01e-140R0I0D0_9BRAS; Uncharacterized protein
STRINGCagra.1655s0054.1.p1e-147(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.12e-77myb domain protein 95