PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1655s0062.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 291aa    MW: 32945.6 Da    PI: 8.2581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1655s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1887179499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++l++++l lp  f +++g+ ++++ +++l +e+g  W++ l+  k +g++++++GW++F+  n+L+++Df+++kl++ +++++v
  Cagra.1655s0062.1.p  87 ACVTASNLRKDILFLPVGFSRSNGLMNRKG-EIILLNEHGIPWTLILS-HKPDGEVYIRSGWRSFCITNRLRANDFLTLKLVQ-TGTTPV 173
                          5578999****************8887666.9***************4.33344599************************98.888899 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          ++++ +
  Cagra.1655s0062.1.p 174 LQLCPS 179
                          999865 PP
2B344.82.3e-14187283197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..s 88 
                          f++ +++++++k+  l+lp++f++++g++k++  ++tl ++ g + +  l+ + + gr+ l+k W+eF++ ng++ gD++ ++l+++  +
  Cagra.1655s0062.1.p 187 FLTLTLKPYNFKKYKLCLPRTFVKTNGIEKAR--KITLVNRYGIKRTTSLKPEDGYGRMRLGKEWREFCDVNGVNIGDSFELELIKEgeD 274
                          67778899******************999766..7********999999977888889*************************9965434 PP

                          EE..EEEEE CS
                   B3  89 efelvvkvf 97 
                          +++ ++k++
  Cagra.1655s0062.1.p 275 TGSHLLKFC 283
                          555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2076179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2280181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.25384179IPR003340B3 DNA binding domain
CDDcd100179.08E-2084178No hitNo description
SMARTSM010197.3E-2885180IPR003340B3 DNA binding domain
PfamPF023623.7E-1787179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-16180284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-16183283IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-12186272No hitNo description
PfamPF023626.3E-13187283IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969187286IPR003340B3 DNA binding domain
SMARTSM010191.4E-17187286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENVSASSPV NPHFFRPLLP GFHTHLVIFF SPSLSFSDMH ESVCCCEFQY DDDDLIQISS  60
DYSDSERNQN TAEAKSSSDD PHSCFVACVT ASNLRKDILF LPVGFSRSNG LMNRKGEIIL  120
LNEHGIPWTL ILSHKPDGEV YIRSGWRSFC ITNRLRANDF LTLKLVQTGT TPVLQLCPSS  180
TASQYRFLTL TLKPYNFKKY KLCLPRTFVK TNGIEKARKI TLVNRYGIKR TTSLKPEDGY  240
GRMRLGKEWR EFCDVNGVNI GDSFELELIK EGEDTGSHLL KFCSKVSKYP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1655s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641259.11e-164B3 domain-containing protein REM14
TrEMBLR0HQ081e-158R0HQ08_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1655s0062.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-45B3 family protein