PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.16630s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SBP
Protein Properties Length: 935aa    MW: 103951 Da    PI: 5.7037
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.16630s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.1e-42144221178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cqv +Ceadls++k+yhrrhkvCe+hska++++v g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Cagra.16630s0008.1.p 144 VCQVGNCEADLSKVKDYHRRHKVCEMHSKATSAIVGGIMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 221
                           6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-33140206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.274142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-39143223IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30145218IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.209.2E-8724826IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-8724825IPR020683Ankyrin repeat-containing domain
CDDcd002042.83E-9727823No hitNo description
PROSITE profilePS502978.561727823IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MEARIEGEPQ HFYGFRAVDL RSVGKRTVEW DLNDWKWDGD LFVATQLHPG GSETTGRQFF  60
PIGNSSNSSS SCSDEAHNSE SLVRSTREVE KKRRAVAIEG DTNGGSLTLK LGDNGCDLNG  120
EREGNSAAKK TKFGGAGAVT NRAVCQVGNC EADLSKVKDY HRRHKVCEMH SKATSAIVGG  180
IMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKTN PEPGANGNPS DDQSSNYLLI  240
SLLKILSNMH TTRSDHTGDQ DLMSHLLKSL VSHAGEQLGK NLVELLLQGG SQGSLNLGNS  300
GLLAIEEAPQ EDLKQLSVNV PEIPQQELYA NGTAAENRSE KQVRMNDFDL NDIYIDSDDT  360
DIERSPPPTN PATSSLDYPS WIHQSSPPQT SRNSDSASDQ SPSSSGEDAQ MRTGRIVFKL  420
FGKEPNDFPV VLRGQILDWL SHSPTDMESY IRPGCIVLTI YLRQAETAWE ELSDDLGFSL  480
RKLLDLSDDP LWTTGWIYVR VQNQLAFVYN GQVVVDTSLP LKSHDYSHII SVKPLAVAAA  540
GKAQFTVKGI NLRRRGTRLL CAVEGKYLIQ ESTHDSTTEE NDDQNNEIVE CVNFSCDLPI  600
ISGRGFMEIE DQGLSSSFFP FLVVEDNDVC SEIRILETTL EFTGTDSAKQ AMDFIHEIGW  660
LLHRSKLGES DPNPDVFPLI RFQWLIEFSM DREWCAVIRK LLNMFFDGAV GDFSSSSNAT  720
LSELCLLHRA VRKNSKPLVE MLLNYVPKQQ RNSLFRPDAA GPAGLTPLHI AAGKDGSEDV  780
LDALTEDPAM VGIEAWKTSR DSTGFTPEDY ARLRGHFSYI HLIQRKINKK STAEDHVVVN  840
IPVSFSDREQ KEPKSGPVTS ALEITQINQL PCKLCDHKLV YGTTRRSVAY RPAMLSMVAI  900
AAVCVCVALL FKSCPEVLYV FQPFRWELLD YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-32135218184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.16630s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159480.0KC815948.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 1 (SPL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639628.10.0squamosa promoter-binding-like protein 1
RefseqXP_023639629.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLD7LFY40.0D7LFY4_ARALL; Uncharacterized protein
STRINGCagra.16630s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]