PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0062.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 174aa    MW: 19696.4 Da    PI: 9.2145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-06830223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         +C+ C+++F ++ +L +Hi+  H
  Cagra.1671s0062.1.p  8 ECGVCKRVFVSPQHLISHINAfH 30
                         6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556735IPR007087Zinc finger, C2H2
PROSITE patternPS000280930IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLYSTHQECG VCKRVFVSPQ HLISHINAFH SNRRVPATFS SPAAAAPSNF RYYPNVNQNQ  60
NPNPGFQGRT HMDYYRRGYL DDEGKFHKGF PPAPAMSRSM TPPARKCKYL MPRTPKISKM  120
PKLMDLFPEE TSSECLRTLP LLCQLEQRRD QEDTVETESS GANSSSIDLS LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304014.11e-125uncharacterized protein LOC17900332
TrEMBLR0GLU41e-124R0GLU4_9BRAS; Uncharacterized protein
STRINGCagra.1671s0062.1.p1e-127(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.14e-47C2H2-like zinc finger protein