PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0210.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 364aa    MW: 39028.4 Da    PI: 7.5569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10296341655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Cagra.1671s0210.1.p 296 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 341
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-14293352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-11294345No hitNo description
Gene3DG3DSA:4.10.280.105.5E-13295353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGLIRYGS APGSFLNSVV DEVIGGGSNA RDFTGYQPSD  60
NFIGNFFAGA DSSSLRSDST TCGVNSSDGQ KQLGNHQSSN NKDLFLDRSY GGFNHEISQQ  120
KSNELGGGSG NSSGSYSLAR QRSSPADFFS YLSADKNNFA LNQPTSDYNN PQVGSTNVGR  180
GHSRLKSQLS FTSHDSLARI NEVNETPVHD GSGHSFSAAS FGAAATDSWD DGSGSIGFTV  240
TRPNKRSKDM DSGLFSQYSL PSDTSMNYMD NFMQLPEDSV PCKIRAKRGC ATHPRSIAER  300
ERRTRISGKL KKLQDLVPNM DKQTSYSDML DLAVQHIKGL QHQLQSLKKD QENCTCGCSE  360
RQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0861060.0AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305016.20.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLR0I6G40.0R0I6G4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1671s0210.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]