PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0236.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 418aa    MW: 46301.1 Da    PI: 6.0654
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0236.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-10211267561
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+     l  
  Cagra.1671s0236.1.p 211 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQSEATSLSAQLTLLQRDTNGLSV 267
                          9*******************************************9999877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-15207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.818209272IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-9211265No hitNo description
PfamPF001701.7E-8211263IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11211262No hitNo description
CDDcd147037.52E-24212261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDKEKSPAPP SGGLPPPSGR YSTFSPNGSS FAMKAESSFP HLTPTGSSSS DANRFSHDIS  60
RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS DLGVVGAADG PSFSDDTDED LMFMYLDMDK  120
FNSSATSTSQ MGEPSEPAWR NELGSTSNLQ STPGSSSERP RIRHQHSQSM DGSTTIKPEM  180
LMSGNEDVSG VDSKKAISAA KLSELALIDP KRAKRIWANR QSAARSKERK MRYIAELERK  240
VQTLQSEATS LSAQLTLLQR DTNGLSVENN ELKLRVQTME QQVHLQDALN DALKEEVQHL  300
KVLTGQGTPN GASMMNYGSF GPNQQFYPNN QSMHTVLAAQ QFQQLQIQSQ KQQQQQQQQQ  360
QQFQFQQQQL YQLQQQQQRL QQQEQQSGAS ELRRPMPSQG QKESVASPDL EASSTKD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0236.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198540.0AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAK2296660.0AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBankBT0289650.0BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645254.10.0probable transcription factor PosF21
RefseqXP_023645255.10.0probable transcription factor PosF21
SwissprotQ040880.0POF21_ARATH; Probable transcription factor PosF21
TrEMBLR0INM30.0R0INM3_9BRAS; Uncharacterized protein
STRINGCagra.1671s0236.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]