PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1671s0236.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 418aa MW: 46301.1 Da PI: 6.0654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1671s0236.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5.2e-10	211	267	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l Cagra.1671s0236.2.p 211 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQSEATSLSAQLTLLQRDTNGLSV 267 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-15	207	271	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	209	272	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-9	211	265	No hit	No description
Pfam	PF00170	1.7E-8	211	263	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-11	211	262	No hit	No description
CDD	cd14703	7.52E-24	212	261	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MDKEKSPAPP SGGLPPPSGR YSTFSPNGSS FAMKAESSFP HLTPTGSSSS DANRFSHDIS 60 RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS DLGVVGAADG PSFSDDTDED LMFMYLDMDK 120 FNSSATSTSQ MGEPSEPAWR NELGSTSNLQ STPGSSSERP RIRHQHSQSM DGSTTIKPEM 180 LMSGNEDVSG VDSKKAISAA KLSELALIDP KRAKRIWANR QSAARSKERK MRYIAELERK 240 VQTLQSEATS LSAQLTLLQR DTNGLSVENN ELKLRVQTME QQVHLQDALN DALKEEVQHL 300 KVLTGQGTPN GASMMNYGSF GPNQQFYPNN QSMHTVLAAQ QFQQLQIQSQ KQQQQQQQQQ 360 QQFQFQQQQL YQLQQQQQRL QQQEQQSGAS ELRRPMPSQG QKESVASPDL EASSTKD*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MDKEKSPAPP SGGLPPPSGR YSTFSPNGSS FAMKAESSFP HLTPTGSSSS DANRFSHDIS  60
RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS DLGVVGAADG PSFSDDTDED LMFMYLDMDK  120
FNSSATSTSQ MGEPSEPAWR NELGSTSNLQ STPGSSSERP RIRHQHSQSM DGSTTIKPEM  180
LMSGNEDVSG VDSKKAISAA KLSELALIDP KRAKRIWANR QSAARSKERK MRYIAELERK  240
VQTLQSEATS LSAQLTLLQR DTNGLSVENN ELKLRVQTME QQVHLQDALN DALKEEVQHL  300
KVLTGQGTPN GASMMNYGSF GPNQQFYPNN QSMHTVLAAQ QFQQLQIQSQ KQQQQQQQQQ  360
QQFQFQQQQL YQLQQQQQRL QQQEQQSGAS ELRRPMPSQG QKESVASPDL EASSTKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1671s0236.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419854	0.0	AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AK229666	0.0	AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBank	BT028965	0.0	BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645254.1	0.0	probable transcription factor PosF21
Refseq	XP_023645255.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	0.0	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0INM3	0.0	R0INM3_9BRAS; Uncharacterized protein
STRING	Cagra.1671s0236.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cagra.1671s0236.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]