PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.16778s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 202aa    MW: 21871.1 Da    PI: 3.7735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.16778s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-19149355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr+++ +g+W+AeIrdp+    r  r++lg+++taeeAa  +++a+ +l+g
  Cagra.16778s0005.1.p  1 FRGVRQRP-WGKWAAEIRDPT----RrVRVWLGTYDTAEEAAVVYDNAAIQLRG 49
                          79******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-37163IPR001471AP2/ERF domain
PfamPF008473.7E-12149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30157IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-22157IPR016177DNA-binding domain
PROSITE profilePS5103224.039157IPR001471AP2/ERF domain
CDDcd000181.55E-32156No hitNo description
PRINTSPR003671.4E-10112IPR001471AP2/ERF domain
PRINTSPR003671.4E-102339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
FRGVRQRPWG KWAAEIRDPT RRVRVWLGTY DTAEEAAVVY DNAAIQLRGP NALLNFPPPP  60
PPPVEEEAEE TSDFISNGGG GCLASPVSVL QSPFSGESTA VEEEFEFPGV SPMVEVKEEP  120
LSTVPGTYTD FSESLFSVDE FFGFPTSMTD CFGGDLFGED LFTDMSFGSG FGFGSGFSSW  180
HVEDHFQDIG DLFGSDPLLA V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.16778s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0498762e-49AL049876.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22B4 (ESSA project).
GenBankAL1615312e-49AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY5608492e-49AY560849.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g11140) mRNA, complete cds.
GenBankBT0251762e-49BT025176.1 Arabidopsis thaliana At4g11140 mRNA, complete cds.
GenBankCP0026872e-49CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF2P32e-49AF080120.1 Arabidopsis thaliana BAC F2P3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288279.11e-114ethylene-responsive transcription factor CRF1
SwissprotO825033e-81CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLR0FFZ11e-113R0FFZ1_9BRAS; Uncharacterized protein
STRINGCagra.16778s0005.1.p1e-142(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-78cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]