PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1681s0033.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 410aa    MW: 45623.2 Da    PI: 9.588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1681s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.21.8e-224089251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +++++s + +++ kR+++++KKA ELSvLC++ev+vi ++ +g+l+++++
  Cagra.1681s0033.1.p 40 SSSSSSSKATSLKKRQETVFKKAGELSVLCGIEVCVICYGADGELKTWPK 89
                         78999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-61490IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.5634391IPR002100Transcription factor, MADS-box
PfamPF003194.0E-144387IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-1744122IPR002100Transcription factor, MADS-box
CDDcd002661.34E-1947115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MVSFSSCSPS YSSSEKKKTT MSIPQIQQTL FKKPSYASSS SSSSSSKATS LKKRQETVFK  60
KAGELSVLCG IEVCVICYGA DGELKTWPKE REKVKAIAQR YAALSETKRR KGSVDLHEFL  120
EKINNDDSQK KTKKKKVRRV PKVKYPVWDP RFDNYSVEQL TGLIQSLERN LTRIQHRVRA  180
VVEGQGQRKI QYLSMANQGP MLPSTMNQYL QQQPNQVSMF LFNHGNGNIS QIPVSASALN  240
QGQSLAPVPP ELMIYPNLDV GNYSGSLGVQ GTGISGFQNM NMNMLAYNNI NSFDGFSKQI  300
DQNSKVESYS SLLGAGIDEL EDTNMYNHNN FNTGDYSGLL GTQGIVTNGL NMSMHDYNNN  360
NNNNNNSVNA NGLSHQFGQF QTQQQQGAFN WDQPGNNFRP LYDLPQPLL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1681s0033.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299790.20.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-173AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8550.0R0I855_9BRAS; Uncharacterized protein
STRINGCagra.1681s0033.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-155AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]