PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1695s0021.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 82aa    MW: 9450.34 Da    PI: 7.8369
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1695s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-091155345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          WT  E +l+ +a + +  +   +W+ +ar +g g++ ++++ ++ 
  Cagra.1695s0021.1.p 11 TWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSVEEVRRHYE 55
                         6*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.665762IPR017884SANT domain
SMARTSM007173.8E-9860IPR001005SANT/Myb domain
CDDcd001674.03E-81158No hitNo description
Gene3DG3DSA:1.10.10.606.1E-61164IPR009057Homeodomain-like
PfamPF002492.2E-71155IPR001005SANT/Myb domain
SuperFamilySSF466897.25E-141265IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSMSSNA TWTRKENKLF ERALAIYDQD TPDRWHNVAR AVGGKSVEEV RRHYELLIRD  60
VNDIESGRYP HPNYYSNGNN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-30180179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1695s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0107701e-94BT010770.1 Arabidopsis thaliana At4g36570 mRNA, complete cds.
GenBankBT0112551e-94BT011255.1 Arabidopsis thaliana At4g36570 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282757.22e-54protein RADIALIS-like 3
SwissprotQ6NNN03e-45RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLR0GTL02e-53R0GTL0_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1695s0021.1.p1e-54(Capsella grandiflora)
STRINGXP_006282757.14e-54(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-37RAD-like 6