PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1696s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 561aa    MW: 61298.1 Da    PI: 7.8519
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1696s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31212269260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  Cagra.1696s0005.1.p 212 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 269
                          8****************************************.***************85 PP
2WRKY106.81.1e-33383441159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Cagra.1696s0005.1.p 383 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 441
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.388206270IPR003657WRKY domain
SuperFamilySSF1182907.85E-25209270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-27210270IPR003657WRKY domain
SMARTSM007748.5E-34211269IPR003657WRKY domain
PfamPF031062.4E-24212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.35E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.825378443IPR003657WRKY domain
SMARTSM007747.7E-39383442IPR003657WRKY domain
PfamPF031064.1E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MNPQANGRKE FQVASSTTGD LTARHDSSGG GGGGGARYKL MSPAMLPISR SNADITIPPG  60
LSPTSFLESP VFISNIKPEP SPTTGSLFKP RPVHISASPS SYTGRAFHQN TFTEQKSSEF  120
EFRPPASNMV YAEVGKHRSE PPLQFQGQGH GSSHSPSSIS DAAGSSSELS RPTPPRQMTS  180
TSSDIPAGSD QDESIQTSQN DSRGSTPSIL ADDGYNWRKY GQKHVKGSEF PRSYYKCTHP  240
NCEVKKLFER SHDGQITDII YKGTHDHPKP QPGRRNSGGL GMAAQEERLD KYPSSTGRDE  300
KGSGVYNVSH PNEQAGNPEI PHTTTTDDGG EAAASNKNKD DPEDDDPFSK RRRMDGVMEI  360
TPLVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT AAGCPVRKHV  420
ERASHDPKAV ITTYEGKHNH DVPTSKSSSN HDIQPRFRPD ETDTISLNLG VGISSDGPNH  480
TSNEHQHQNQ QLVNQSHPNG VNFRFVHASP MPSYYASLNS GMNQYGPRET KNETQNGDIS  540
SLNHSSYPYP PNIGRIQSGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36210443877Probable WRKY transcription factor 4
2lex_A1e-36210443877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1696s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258370.0AF425837.1 Arabidopsis thaliana WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
GenBankAJ6304790.0AJ630479.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g26640D.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633666.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GYJ60.0R0GYJ6_9BRAS; Uncharacterized protein
STRINGCagra.1696s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein