PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.17254s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 99aa    MW: 11251.1 Da    PI: 10.4216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.17254s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.9e-11892288
                          EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                          +k+lt sd ++++rl++pkk +e++       ++++++++ + d  g +s+ v++     ++ y++++GW +   a +L+ g ++ ++ ++
  Cagra.17254s0001.1.p  8 EKTLTDSDLSNNNRLRIPKKMVENItkstgVPIPRKGIQVEIVD--GnKSYWVNM-----GQDYIMGSGWASLNAARQLQKGNIIKLYWQK 91
                          799*******************9889997633445665555555..425666677.....678**********************999433 PP

                          SS CS
                    B3 87 rs 88
                           +
  Cagra.17254s0001.1.p 92 -T 92
                          .3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-10391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-13593IPR015300DNA-binding pseudobarrel domain
CDDcd100173.26E-10696No hitNo description
PfamPF023622.2E-8893IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MNQDLMIEKT LTDSDLSNNN RLRIPKKMVE NITKSTGVPI PRKGIQVEIV DGNKSYWVNM  60
GQDYIMGSGW ASLNAARQLQ KGNIIKLYWQ KTKFIFSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.17254s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289275.11e-54B3 domain-containing protein At1g08985
SwissprotQ8GWU17e-37Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLR0HEH12e-53R0HEH1_9BRAS; Uncharacterized protein
STRINGCagra.17254s0001.1.p4e-66(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-39B3 family protein