PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1757s0016.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 202aa MW: 22064.6 Da PI: 9.4142

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1757s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	9e-40	23	82	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn ++ Cagra.1757s0016.1.p 23 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNATK 82 5789****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	27	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	27	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQDPAAYYQT MMAKQQQQPQ FAEQEQLKCP RCDSPNTKFC YYNNYNLSQP RHFCKSCRRY 60 WTKGGALRNV PVGGGSRKNA TKRSTSSSSS SSPAPSSNTN KKTKNPDPGP DQQPNPDLDL 120 TRMLYGFPIG DQDVKGMEIG GSFSSLLASN MQLGLGGGIL LDGSGWDHHP GMGLGLRRSE 180 PGGNNNTNPW TDLAMNRVEK N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1757s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017565	1e-161	AB017565.1 Arabidopsis thaliana adof2 mRNA for Dof zinc finger protein, complete cds.
GenBank	AB023045	1e-161	AB023045.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXL8.
GenBank	AY045847	1e-161	AY045847.1 Arabidopsis thaliana putative Dof zinc finger protein (At3g21270) mRNA, complete cds.
GenBank	AY150391	1e-161	AY150391.1 Arabidopsis thaliana Dof zinc finger protein (At3g21270) mRNA, complete cds.
GenBank	CP002686	1e-161	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298589.1	1e-146	dof zinc finger protein DOF3.1
Swissprot	Q94AR6	1e-101	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	R0G7B3	1e-144	R0G7B3_9BRAS; Uncharacterized protein
STRING	Cagra.1757s0016.1.p	1e-148	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	2e-70	DOF zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Cagra.1757s0016.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]