PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.17733s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 258aa    MW: 29535.3 Da    PI: 9.9372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.17733s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-163175146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          ++rWT  E+++l+++v ++G + Wk Ia++m+ +Rt ++c+ rw++
  Cagra.17733s0002.1.p 31 KDRWTDSEELRLKELVGLHGLDKWKIIAEKMQ-TRTSNSCRMRWYN 75
                          68******************************.************8 PP
2Myb_DNA-binding445.1e-1486127447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +T++Ede ++ a +++G++ W++Ia+ +  gRt +++k+rw+ +
  Cagra.17733s0002.1.p  86 FTEDEDEVILVAQRLFGNK-WSKIAKLLE-GRTNNDVKNRWRVL 127
                           8******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2112681IPR017930Myb domain
SMARTSM007178.7E-153079IPR001005SANT/Myb domain
SuperFamilySSF466897.55E-2630124IPR009057Homeodomain-like
PfamPF002491.8E-143175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-203385IPR009057Homeodomain-like
CDDcd001675.72E-133377No hitNo description
SMARTSM007171.1E-1082130IPR001005SANT/Myb domain
PROSITE profilePS5129415.09382132IPR017930Myb domain
CDDcd001672.93E-986128No hitNo description
PfamPF002499.3E-1286127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-1786128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
RPLNGVGANN ASPLREMHQE STVQKKVIRR KDRWTDSEEL RLKELVGLHG LDKWKIIAEK  60
MQTRTSNSCR MRWYNELNPK TNQADFTEDE DEVILVAQRL FGNKWSKIAK LLEGRTNNDV  120
KNRWRVLVTN RSFTRQLQSK LSNLAALVRQ HPHNLLAAMD EFHNYRSNML NEETTNLHAQ  180
YLQEENNSSR MPEQHSGHHH HFSTIFPADP LALFTPHVSI PQPPPPSAPF SLPSPGAADA  240
MTRKTPKFFD FLGVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-243412410100B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.17733s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634873.11e-174transcription factor MYB117
TrEMBLR0GML01e-133R0GML0_9BRAS; Uncharacterized protein
STRINGCagra.17733s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3354122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-48myb domain protein 110