PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.17733s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 208aa    MW: 23646.6 Da    PI: 9.5172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.17733s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-16751146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          rg WT+  d++l+++v+ +G + W++Ia++m+ +Rt+k+c+ rw++
  Cagra.17733s0003.1.p  7 RGHWTESQDLKLKELVEAHGLEKWDLIAKEMQ-TRTPKSCRVRWFN 51
                          899*****************************.***********98 PP
2Myb_DNA-binding43.38.4e-1460103247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T eE+++++  +  +G+  W++Ia+++  gR+++++k +w+ y
  Cagra.17733s0003.1.p  60 APFTLEEEDIIISTHSYYGNQ-WAKIAKHLK-GRSENDVKKHWNHY 103
                           68*****************99.********9.************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.022153IPR017930Myb domain
SMARTSM007177.7E-14655IPR001005SANT/Myb domain
PfamPF002491.8E-15751IPR001005SANT/Myb domain
SuperFamilySSF466896.25E-277100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-22860IPR009057Homeodomain-like
CDDcd001671.10E-131051No hitNo description
PROSITE profilePS5129422.05254108IPR017930Myb domain
SMARTSM007171.1E-1158106IPR001005SANT/Myb domain
PfamPF002491.4E-1260103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-1961106IPR009057Homeodomain-like
CDDcd001671.84E-961104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSAPGSRGHW TESQDLKLKE LVEAHGLEKW DLIAKEMQTR TPKSCRVRWF NQVDPTLNRA  60
PFTLEEEDII ISTHSYYGNQ WAKIAKHLKG RSENDVKKHW NHYVNRPAWR SHTKTKKSFF  120
TASLNPYGYH VPGNPSYEGM RYEETTNLSA HHQQFPIFPG GGSLAPLSTQ LSISQPSPAP  180
EAEDVMIRKT PKFIDFLGVG ESSRNNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2571087108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590KHLKGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.17733s0003.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285370.21e-154transcription factor MYB117
TrEMBLR0H4081e-94R0H408_9BRAS; Uncharacterized protein
STRINGCagra.17733s0003.1.p1e-155(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17330310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-38myb domain protein 105