PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.18025s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19044.8 Da    PI: 7.2906
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.18025s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13e-151564150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          k+ie +  r vt+skR+ngi  K  ELSvLCd++va + +  +gk y++ 
  Cagra.18025s0001.1.p 15 KKIEREEDRLVTLSKRKNGIYTKLCELSVLCDVNVAFLGYTGSGKPYTFG 64
                          6899999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-22777IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-18766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.965767IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-15929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSSKKTKGRQ KIKIKKIERE EDRLVTLSKR KNGIYTKLCE LSVLCDVNVA FLGYTGSGKP  60
YTFGSPSFHA VVERFLNGEA SMSSSSLQRP VDSDNKAKIQ ELCKLYNNMM DGARAEEAKA  120
TEAAASVEPL PEDAWWKVPL EEVKDQEEMK HLLERFEGLY EKLCYELA
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.18025s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289244.11e-111agamous-like MADS-box protein AGL62
TrEMBLR0FID91e-110R0FID9_9BRAS; Uncharacterized protein
STRINGCagra.18025s0001.1.p1e-122(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-53AGAMOUS-like 64