PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1809s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 475aa    MW: 52300.5 Da    PI: 6.609
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1809s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17156205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cagra.1809s0003.1.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205
                          78*******************......55************************997 PP
2AP240.66.3e-13248297154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ + +
  Cagra.1809s0003.1.p 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAINTN 297
                          89********.7******5553..2.26**********99*********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-15156213IPR016177DNA-binding domain
PfamPF008475.4E-9156205IPR001471AP2/ERF domain
SMARTSM003801.2E-32157219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-17157213IPR001471AP2/ERF domain
CDDcd000181.21E-10157212No hitNo description
PROSITE profilePS5103217.82157213IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-16248308IPR016177DNA-binding domain
PfamPF008473.3E-8248295IPR001471AP2/ERF domain
CDDcd000181.10E-22248308No hitNo description
SMARTSM003802.5E-29249312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15249307IPR001471AP2/ERF domain
PROSITE profilePS5103215.409249306IPR001471AP2/ERF domain
PRINTSPR003679.4E-6250261IPR001471AP2/ERF domain
PRINTSPR003679.4E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY LDRQTSDGSA GNRLEESGTS TSSVINADGD EDSCSTRAFT  60
LSFDILKVGS SSGGDESPAS ASAAGVTKEF FPVSGDCGHL RDFEGSSSRS WIDLSFDRNG  120
DGETKLMAPV QVPVPTPAPV PAQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFTLGDYEED MKQVQNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAINTNGRE  300
AVTNFEMSSY QNEINSENNN EGGHDKLDLN LGMSLSPGNA PKQNGRLFHF PSNTYETQRG  360
VSLRMDNEFM GKPVNTPIPY GSSDHRVYWN GACPSYNNPV EGRATEKRSE AEVMMSNWGW  420
QRQGQTSTVR QQPPGPQPPP PPLFSVAAAS SGFSHFRPQP PNDNAARGYF YPQP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1809s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250740.0AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0508150.0AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
GenBankAY0914180.0AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296222.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN30.0R0HUN3_9BRAS; Uncharacterized protein
STRINGCagra.1809s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7