PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.18121s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 314aa    MW: 35123.1 Da    PI: 7.4998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.18121s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174062123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C + F++   L  H+++H
  Cagra.18121s0016.1.p 40 YTCSFCRREFRSAQALGGHMNVH 62
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-63766No hitNo description
SMARTSM003550.00614062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194067IPR007087Zinc finger, C2H2
PfamPF139122.1E-54063IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEKPGDFWIP KKSNKESSSW EELAFAEDDA AGSLWPPRSY TCSFCRREFR SAQALGGHMN  60
VHRRDRARLK QADDDQYLFS KPSSSPEYPS HNDSDDIRET SCYTLVFNSK PNYFKKTQHS  120
CVIDLSSSSS SPSLPYLTPS SRVSSGLPEK QNSFSSSPSF VVEPSNNSSY IPSSSPWSSP  180
STFVDQKRCD LYAIPGMEGD KKRKIENDVP KIGHKAKLSL GNSCTTDLSV SMNLVIHQSF  240
PITAQGSDEE IERGDIRKRR RRHESPSQPS IFISSLSCKS DIITRKEEIK HKGDPFEDLD  300
LELRLGTDPP KGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133562229superman protein
2l1o_A4e-133562229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.18121s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296475.10.0zinc finger protein 10
SwissprotO809421e-171ZFP10_ARATH; Zinc finger protein 10
TrEMBLR0HZ730.0R0HZ73_9BRAS; Uncharacterized protein
STRINGCagra.18121s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-137zinc-finger protein 10