PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1822s0015.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 1721aa    MW: 193642 Da    PI: 4.893
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1822s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-194499257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ qle+Le+++ ++ yps+++r++L++kl+Lt+rq ++WF+ rR k+kk
  Cagra.1822s0015.1.p 44 PKRQMKTPFQLETLEKVYSEETYPSEATRADLSDKLNLTDRQLQMWFCHRRLKDKK 99
                         69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-182899IPR009057Homeodomain-like
SuperFamilySSF466897.27E-1636100IPR009057Homeodomain-like
PROSITE profilePS5007116.06640100IPR001356Homeobox domain
SMARTSM003893.8E-1742104IPR001356Homeobox domain
PfamPF000461.4E-164499IPR001356Homeobox domain
CDDcd000865.54E-144599No hitNo description
PROSITE profilePS5082717.399555614IPR018501DDT domain
SMARTSM005713.1E-23555614IPR018501DDT domain
PfamPF027912.1E-17556611IPR018501DDT domain
PfamPF050663.2E-15737804IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.3E-6938977IPR028942WHIM1 domain
PfamPF156136.8E-1411111183IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1721 aa     Download sequence    Send to blast
MEMGSDGDED QIRSLVVAAD VVVGGSNNKK KNKIDNSSSS SLKPKRQMKT PFQLETLEKV  60
YSEETYPSEA TRADLSDKLN LTDRQLQMWF CHRRLKDKKD GQAKKPVKPA VSVQPAALAS  120
SVHDLPSARS VPQQDSGSGS DSGSGNSPYS DSRRNFASGS SSSRAELDEY ETMGNPSYEP  180
RLSAMVRRAI LYIEAQLGEP LRDDGPILGM DFDPLPPGAF GTPIAMQKHL LLPYDSKMYE  240
PHDVRPRRSQ AAARSFHEQQ SLDDPSSFTP EMYGRYSENH AHGMDYDIAR SRSSSFMHEN  300
GSLPRSYGTP GHASRNCSTS QQDMPSPIVA SAHHRGDRYL MEKDSSGLGT EDPYLLPDVR  360
KSNDVHRKGK IHDGKLGRGS ETRENRGPKD LEKLEIQRKK NEERMRKEME RNERERRKEE  420
ERLMRERIKE EERLQREQRR EMERREKFLQ RENERAEKKK QKEEIRREKD AIRRKIAIEK  480
ATARRIAKES MDLVEDEQLE LMELAAISKG LPSVLQLDHD TLQNLELYRD SLSTFPPKGL  540
QLKMPFAISP WKDSDESVGN LLMVWRFLTS FSDVFDLWPF TLDEFIQAFH DYDSRLLGEI  600
HITLLRSIIR DIEDVARTPF SGIGNNQYTT ANPEGGHPQI VEGAYAWGFD IRSWKKNLNP  660
LTWPEILRQF SLSAGFGPRL KKKNSRLTHI GDKDEAKGCE DIISTIRSGS AAESAFALMR  720
EKGLLAPRKS RHRLTPGTVK FAAFHVLSLE GNKGLTVLDL ADKIQKSGLR DLTTSKTPEA  780
SISVALTRDV KLFERIAPST YCVRAPYVKD PADGEAILAD ARKKIRAFEN GFTGPEDVND  840
LERDEDFEID IDEDPEVDDI ATLASASKSA DLGEENVLSG KGGDTIFCDV KADVKSEIEK  900
EYSSPPPSSM KSIVPLHSER LKDTAVGCVD MVDESNQGQS WIQGLTEGDY CHLSVEERLN  960
ALVALVSIAN EGNSIRAGLE DRMEAANSLK KQMWAEAQLD NSCMRDVLKL DFQNLANSKT  1020
ESTMSVPIIQ SSTRERDSFD RDPSELLDET KPLEVVSTDL HKASAERGLT NQVANISQEN  1080
FSSQHGYASK RSRSQLKSYI GHKAEEVYPY RSLPLGQDRR HNRYWLFAAS ASKSDPSSGL  1140
LFVELQDGKW LLIDSEEAFD TLVASLDMRG IRESHLRIML QKIEGSFKEN ASKNIKLARN  1200
PFLTEKSVMN HSPTDSVSPS SAISGSNSDS METSTSIRVE FGRNDMEKKN LSKRFHDFQR  1260
WMWTETHNLL PSCARKYGKK RSELLATCDV CVASYLSEYT HCTSCQQRLD MVDSSEISDS  1320
GLTVSPLPFG VRLLKPLLVF LEASVPDEAL ESFWTEDQRK MWGFRLNASS SPEELLQVLT  1380
SLESAIKKEY LSSNFMSAKE LLGGDDVVAD DQGSVDVLPW IPKTVSAVAL RLSELDASII  1440
YVKPEKPELI PEDENEQISL FPENSLFKGK GPRGQEDQDE VVPNSGSKRS NKRARVSLGS  1500
GSNRKAKRKK AQGGPNRFVV SRRNVAVDNN LMSIELNHQV PGRGKRTVRK RPERINEDNV  1560
HLVNRMADIV RPRSQEAEED EEEEEQTFRD IDEDWAAGET PIEMDEDWAN ETPNRMMAPM  1620
QVDDESDNSV GVESEDEDVD GQFVDYSQRN KWGLDWNSNP NEAVEDEEEE EVVVGVERVE  1680
GEDDAEMSES SEDDDDDVPA NNAANNYDRE ESDGYSSSDS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRLKDKKD
215021509NRKAKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1822s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632883.10.0homeobox-DDT domain protein RLT1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLR0GJH70.0R0GJH7_9BRAS; Uncharacterized protein
STRINGCagra.1822s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1