PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1843s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 424aa    MW: 46477.8 Da    PI: 9.8175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1843s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05181203223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           Cp Cg++F+  ++L+ H+ + H
  Cagra.1843s0002.1.p 181 ACPQCGEVFPKLESLELHQAVrH 203
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
PROSITE profilePS501578.683180208IPR007087Zinc finger, C2H2
SuperFamilySSF563994.51E-21205419No hitNo description
Gene3DG3DSA:3.90.228.101.6E-13208420IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAPLPFIPET THKQMRLSSE QKKKNTKKKT SQPPPQTQTQ KLKQKTVPST SSSSSSSWSQ  60
IKNLLSCKQV EGTRVHEPSK IASSSCGSSL CKFSDVIYGN ARVIHRSDHS PESSNLGQDA  120
RLLTRKPVNR ESSSSVRSNG CGAYSSYSTS KAMHFRKLSG CYECHMIVDP SRSPIAPRVC  180
ACPQCGEVFP KLESLELHQA VRHAVSELGP EDSGRNIVDI IFKSSWLRKD SPIYKIERIL  240
KVHNTQRTIQ RFEDCRDVVK SHAHASTRKE PRSAADGNEL LRFHCTTVSC SLGSRGSTSL  300
CSAVPGCRVC TIIRHGFHAK TVRLGNGEGK EEIKGVRTTA SSGRAHDVLR CFDQRRAMLV  360
CRVIAGRVRR VQSDVSPEDE SGSGSYDSVA GPAGVYASLD DLVVYNPKAI LPCFVVIYKV  420
SEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1843s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307600.10.0uncharacterized protein LOC17900421
TrEMBLR0IT110.0R0IT11_9BRAS; Uncharacterized protein
STRINGCagra.1843s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-152C2H2-like zinc finger protein