PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1873s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 165aa    MW: 18757.1 Da    PI: 6.1199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1873s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.83.2e-11100121122
                          ---SS-EEEEEEE--TT-SS-E CS
                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                          ldDgy+WrKYGqK+vk++ +pr
  Cagra.1873s0003.1.p 100 LDDGYRWRKYGQKSVKNNAHPR 121
                          59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-1286121IPR003657WRKY domain
SuperFamilySSF1182901.7E-1492141IPR003657WRKY domain
PROSITE profilePS5081113.99995142IPR003657WRKY domain
SMARTSM007748.9E-15100141IPR003657WRKY domain
PfamPF031061.5E-7101121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDDREEDINP MLSLDVENNN TFSSFVDKTL MMMMPPLTFS GEVVAPSSSS TSWYPESLHA  60
PQPAPENDQI GDKGKSKEKE KRSRRVPRIA FQTRSDDDVL DDGYRWRKYG QKSVKNNAHP  120
RLAKDPNVVV TTYEGIHNHP CEKLMETLNP LLRQLQFLSS FSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1490139774Probable WRKY transcription factor 4
2lex_A1e-1490139774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1873s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052331e-84AB005233.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23.
GenBankAF4048641e-84AF404864.1 Arabidopsis thaliana WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
GenBankAK2275221e-84AK227522.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-N18.
GenBankBT0045951e-84BT004595.1 Arabidopsis thaliana At5g41570 gene, complete cds.
GenBankCP0026881e-84CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284960.11e-114probable WRKY transcription factor 24
SwissprotQ9FFS35e-85WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLR0H2X11e-112R0H2X1_9BRAS; Uncharacterized protein
STRINGCagra.1873s0003.1.p1e-120(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-69WRKY DNA-binding protein 24