PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.19122s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 139aa    MW: 15461.2 Da    PI: 8.9981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.19122s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-053355123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ F++   L  H++ H
  Cagra.19122s0001.1.p 33 YECTFCKRGFTNAQALGGHMNIH 55
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-52558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-73060No hitNo description
PROSITE profilePS5015711.1363360IPR007087Zinc finger, C2H2
SMARTSM003550.00973355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MECERSSSST SSDTGAVRHR HTSSSSTVTR RMYECTFCKR GFTNAQALGG HMNIHRRDRL  60
NKAKVQNDAD VALSQARRCF HVASDRGGGY EQVDSVVMRT TTTTSNYIQH LRIGSMATRR  120
EHVVVEGDEI DLELRLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.19122s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168751e-135AB016875.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7.
GenBankCP0026881e-135CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282017.15e-90zinc finger protein JAGGED
TrEMBLR0GRE61e-88R0GRE6_9BRAS; Uncharacterized protein
STRINGCagra.19122s0001.1.p5e-97(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-67C2H2 family protein