PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1914s0015.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 217aa    MW: 25187.9 Da    PI: 4.2676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1914s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.3e-2011125119
                  NAM   5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                          +rF+P+d e+ v++L kkv g+++++ +v +e+ di++++P+d+p + ++e+++wyf++ + k++      +++     W  tg+++evl
  Cagra.1914s0015.1.p   1 MRFRPSDLEMAVYFLLKKVLGHHMKARTVPQEChDIFSTHPRDFPDNDQEEDEHWYFYCLKTKNKFA----TKS--YNLWIPTGEETEVL 84 
                          69************************99999999***********77778899*******9876532....222..347*********** PP

                  NAM  94 sk..kgelvglkktLvfykgrapkgekt 119
                          +   ++elvg+k++++f ++++++ ek+
  Cagra.1914s0015.1.p  85 DPkkNDELVGIKRSFAFIENEDEEEEKS 112
                          98667778**********8877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023653.2E-81133IPR003441NAC domain
PROSITE profilePS5100525.791153IPR003441NAC domain
SuperFamilySSF1019411.96E-241153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRFRPSDLEM AVYFLLKKVL GHHMKARTVP QECHDIFSTH PRDFPDNDQE EDEHWYFYCL  60
KTKNKFATKS YNLWIPTGEE TEVLDPKKND ELVGIKRSFA FIENEDEEEE KSENNSLPDE  120
EEEPPRYNWF LDEISLPLTV VDTQWTLCHV FCKNTKPEFV SLPVMESQSE SESQSQSESE  180
SVQSEEKKES VDKPAETLDL GKEKDETVLP PPPPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1914s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284403.11e-154NAC domain-containing protein 104 isoform X1
TrEMBLR0F6W51e-153R0F6W5_9BRAS; Uncharacterized protein
STRINGCagra.1914s0015.1.p1e-157(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.13e-76NAC domain containing protein 95