PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1961s0079.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 189aa    MW: 21344.3 Da    PI: 4.5625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1961s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-201162156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g+
  Cagra.1961s0079.1.p 11 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALYCLRGN 62
                         89*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-211170IPR016177DNA-binding domain
PfamPF008473.3E-121161IPR001471AP2/ERF domain
CDDcd000181.75E-281171No hitNo description
PROSITE profilePS5103222.1811269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-301270IPR001471AP2/ERF domain
SMARTSM003802.6E-321275IPR001471AP2/ERF domain
PRINTSPR003671.1E-91324IPR001471AP2/ERF domain
PRINTSPR003671.1E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEGSSSSSMQ SKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYDTPEKAAR AFDAALYCLR  60
GNNAKFNFPE NPPAINGGRN LSRSEIREAA ARFANSEEEK ESSVREGSSY EIQQESTSNS  120
MDIDSEFLSM LPTVGSGNFA SEFGLFPGFD DFSDEYSGDR FREQLSPTQQ DYYHGEETYD  180
GSIILWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16370573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1961s0079.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306071.11e-136ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-114ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLR0I9A01e-134R0I9A0_9BRAS; Uncharacterized protein
STRINGCagra.1961s0079.1.p1e-136(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-113ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]